interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF SOPB(155-272)-18MER COMPLEX, I23 FORM
(Protein sopB)
referenceSchumacher et al. 'Nucleic 38 4514 2010
sourceEscherichia coli
experimentX-ray (resolution=2.99, R-factor=0.233)
structural superfamilyKorB DNA-binding domain-like;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSSRKIRR

Estimated binding specificities ?

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# IC=7.999 IC/col=1.000 n_of_columns=8 specificity:   
A |  19   0   0   0   0   9   0  96
C |   9   0   0  29  96  57  96   0
G |   9  96  96   0   0  11   0   0
T |  59   0   0  67   0  19   0   0
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Dendrogram of similar interfaces ?

matrix format

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updated Mon Dec 16 21:30:43 2024