interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF SOPB(155-272)-18MER COMPLEX, I23 FORM
(Protein sopB)
referenceSchumacher et al. 'Nucleic 38 4514 2010
sourceEscherichia coli
experimentX-ray (resolution=2.99, R-factor=0.233)
structural superfamilyKorB DNA-binding domain-like;
multimeric complexes3mkz_AN
reference complex3mkz_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSSRKIRR

Estimated binding specificities ?

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# IC=7.791 IC/col=0.974 n_of_columns=8 specificity:   
A |   0   0  19   0  77   0   0  57
C |   9   0   0   0   0  96  96   9
G |   9  96  68  96  19   0   0  11
T |  78   0   9   0   0   0   0  19
scan!

Dendrogram of similar interfaces ?

matrix format

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updated Mon Dec 18 08:32:29 2023