structure name | STRUCTURE OF THE TRICHOMONAS VAGINALIS MYB3 DNA-BINDING DOMAIN BOUND TO A PROMOTER SEQUENCE REVEALS A UNIQUE C-TERMINAL BETA-HAIRPIN CONFORMATION (MYB3) |
reference | Hsiao et al. 'Nucleic 40 449 2012 |
source | TRICHOMONAS VAGINALIS |
experiment | X-ray (resolution=2.90, R-factor=0.218) |
structural superfamily | Homeodomain-like; |
sequence family | Myblike DNAbinding domain; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | KREDNKNNS |
Estimated binding specificities ?
readout + contact |
A | 0 84 96 0 0 60 12 C | 0 12 0 96 0 12 12 G | 0 0 0 0 96 12 12 T | 96 0 0 0 0 12 60scan! |
Dendrogram of similar interfaces ?
matrix formatKTRCECNA----DCNA--KANAHTNTSCTC L +-----------------------------1msf_C +-1 KGRTEC--------NA--KGNA--NTST-- +-2 +-----------------------------1h89_C ! ! --------RT--RCET----SA--QAKT-- L --3 +-----------------------------6qec_A ! --------RGHCRGRGQA--QGKG------ L +-----------------------------2glo_A |
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updated Fri Sep 13 18:00:47 2024