3zqc_A : 3D-footprint complex

structure name	STRUCTURE OF THE TRICHOMONAS VAGINALIS MYB3 DNA-BINDING DOMAIN BOUND TO A PROMOTER SEQUENCE REVEALS A UNIQUE C-TERMINAL BETA-HAIRPIN CONFORMATION (MYB3)
reference	Hsiao et al. 'Nucleic 40 449 2012
source	TRICHOMONAS VAGINALIS
experiment	X-ray (resolution=2.90, R-factor=0.218)
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zqc_A interface=38,41,42,88,89,92,93,96,97, mkgpfteaeddlireyvkengpqnwpritsflpnrspKqcRErwfnhldpavvkhawtpeedetifrnylklgskwsviaklipgrtDNaiKNrwNSsiskristnsnhkeillpdrs
interface signature	KREDNKNNS

Estimated binding specificities ?

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# IC=7.099 IC/col=1.014 n_of_columns=7

specificity:

A |  54  13   0   0   0   0  96
C |  13  13  96   0   0   0   0
G |  13  16   0  96   0   0   0
T |  16  54   0   0  96  96   0

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Dendrogram of similar interfaces ?

matrix format

  
  KTRCECNA----DCNA--KANAHTNTSCTC   L       +-----------------------------1msf_C    
                                         +-1 
  KGRTEC--------NA--KGNA--NTST--       +-2 +-----------------------------1h89_C    
                                       ! ! 
  --------RT--RCET----SA--QAKT--   L --3 +-----------------------------6qec_A    
                                       ! 
  --------RGHCRGRGQA--QGKG------   L   +-----------------------------2glo_A

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updated Sun Aug 3 07:49:26 2025