interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.36, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNMK/RNNIR

Estimated binding specificities ?

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# IC=7.354 IC/col=0.919 n_of_columns=8 specificity:   
A |  20   0   0  96  27  15   0  96
C |  13   0   0   0   9  13   0   0
G |  54   0  96   0   6  20   0   0
T |   9  96   0   0  54  48  96   0
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updated Wed Jul 30 00:55:28 2025