interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.36, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNMK/RNNIR

Estimated binding specificities ?

readout + contactlogo
# IC=7.451 IC/col=0.931 n_of_columns=8 specificity:   
A |   0  96  57  25   0   0  96  20
C |   0   0  19   6   0  96   0  51
G |   0   0   6  12   0   0   0   6
T |  96   0  14  53  96   0   0  19
scan!

home
updated Fri Dec 13 19:24:48 2024