interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.36, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A 4cyc_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNMK/RNNIR

Estimated binding specificities ?

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# IC=7.520 IC/col=0.940 n_of_columns=8 specificity:   
A |  20   0   0  96  57  16   0  96
C |  13   0   0   0  13  20   0   0
G |  57   0  96   0   6   6   0   0
T |   6  96   0   0  20  54  96   0
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updated Mon Jan 5 08:53:31 2026