interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.36, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A 4cyc_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNMK/RNNIR

Estimated binding specificities ?

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# IC=7.215 IC/col=0.902 n_of_columns=8 specificity:   
A |   0  91  53  30   0   0  96  16
C |   0   0  16  11   0  96   0  56
G |   0   5  11   5   0   0   0   8
T |  96   0  16  50  96   0   0  16
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updated Wed Jun 24 20:34:08 2026