interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.36, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNMK/RNNIR

Estimated binding specificities ?

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# IC=7.423 IC/col=0.928 n_of_columns=8 specificity:   
A |   0  96  57  51   0   0  96  25
C |   0   0   6   6   0  96   0  51
G |   0   0  14  19   0   0   0   6
T |  96   0  19  20  96   0   0  14
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updated Mon Sep 9 21:47:57 2024