4cyc_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS (HOMEOTIC PROTEIN ULTRABITHORAX)
reference	Ortiz-Lombardia et al. Structure 23 270 2015
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.36, R-factor=0.213)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	1b8i_AB 4cyc_AB 4uus_AB 4uus_EF
redundant complexes	1b8i_A 4uus_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cyc_A interface=7,49,52,53,56,60, fypwmaRqtytryqtlelekefhtnhyltrrrriemahalclterqikIwfQNrrMklkKeiqaik
interface signature	RIQNMK

Estimated binding specificities ?

readout + contact

# IC=3.555 IC/col=0.889 n_of_columns=4

specificity:

A |  96   0  76  38
C |   0   0   0  19
G |   0   0  20  20
T |   0  96   0  19

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RT--IAQCNAMG----   L     +-----------------------------1b72_A    
                           ! 
  RTQTVAQTNA------   L     !                             +8osb_E    
                           !             +---------------1 
  RT--VTKGNA--KA--   L   +-5        +----2               +2lkx_A    
                         ! !        !    ! 
  ----NCICNARGRG--   L   ! !     +--3    +---------------4xrm_B    
                         ! !     !  ! 
  RC--IAQCNAYC----   L --6 +-----4  +--------------------3rkq_B    
                         !       ! 
  ----VTCCNAQA--RT   L   !       +-----------------------8g87_X    
                         ! 
  ----------YCFAKC   L   +-----------------------------6pe2_B

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updated Wed Dec 18 00:22:41 2024