interface graph thumbnail
legend  pdf

structure nameCCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
(HAPB PROTEIN)
referenceHortschansky et al. Structure 20 1757 2012
sourceEMERICELLA NIDULANS
experimentX-ray (resolution=1.80, R-factor=0.158)
sequence familyCCAATbinding transcription factor CBFB/N;
multimeric complexes4g92_ABC 6y35_ABC 6y36_ABC 6y37_ABC 7aw7_ABCDE 7aw9_ABCDE
redundant complexes6y35_A 6y36_A 6y37 7aw7 7aw9
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRHRRRF

Estimated binding specificities ?

contactlogo
# IC=4.969 IC/col=0.828 n_of_columns=6 specificity:   
A |   9  73   7   0   0   7
C |   7   7   0   0   0   7
G |  73   7   8   0  89  75
T |   7   9  81  96   7   7
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: CCAAT
CCAATPubMed4g92_A(1.40e-05), 4g92_ABC(1.40e-05), 6y35_ABC(3.75e-04), ... (total=7)
ATTGGPubMed4g92_A(1.40e-05), 4g92_ABC(1.40e-05), 6y35_ABC(3.75e-04), ... (total=7)
CCAACPubMed4g92_A(7.21e-03), 4g92_ABC(7.23e-03), 6y36_ABC(3.65e-04), ... (total=5)
CCAATCGCATPubMed4g92_A(9.62e-04), 4g92_ABC(9.64e-04), 6y35_ABC(1.84e-04), ... (total=7)
GCCAAPubMed4g92_A(7.21e-03), 4g92_ABC(7.23e-03), 6y36_ABC(3.65e-04), ... (total=5)
TGCCAATCAPubMed4g92_A(8.00e-07), 4g92_ABC(7.98e-07), 6y35_ABC(1.10e-04), ... (total=7)
CTGATTGGCPubMed4g92_A(8.00e-07), 4g92_ABC(7.98e-07), 6y35_ABC(1.10e-04), ... (total=7)
GCAATGAPubMed4g92_A(1.11e-02), 4g92_ABC(9.50e-03), 6y35_ABC(3.53e-03), ... (total=7)
CAATTPubMed4g92_A(7.14e-03), 4g92_ABC(7.13e-03), 6y35_ABC(1.40e-04), ... (total=7)
GCCAATPubMed4g92_A(1.63e-04), 4g92_ABC(1.63e-04), 6y35_ABC(1.18e-03), ... (total=7)

home
updated Fri Sep 13 18:15:18 2024