| structure name | CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA (TRANSCRIPTION FACTOR HAPC EUROFUNG) | |
| reference | Hortschansky et al. Structure 20 1757 2012 | |
| source | ASPERGILLUS NIDULANS | |
| experiment | X-ray (resolution=1.80, R-factor=0.158) | |
| structural superfamily | Histone-fold; | |
| sequence family | Histonelike transcription factor CBF/; | |
| multimeric complexes | 4g92_ABC 6y35_ABC 6y36_ABC 6y37_ABC 6y39_BCEFHI 7aw7_ABCDE 7aw9_ABCDE | |
| redundant complexes | 6y37_B 6y35 6y36 6y39 7aw7 7aw9 | |
| links to other resources | NAKB  PDIdb DNAproDB | |
| protein sequence | ||
| site | source | matches (E-value) |
|---|---|---|
| term: CCAAT | ||
| CCAAT | PubMed | 4g92_ABC(1.40e-05), 6y35_ABC(3.75e-04), 6y36_ABC(1.26e-07), ... (total=4) |
| ATTGG | PubMed | 4g92_ABC(1.40e-05), 6y35_ABC(3.75e-04), 6y36_ABC(1.26e-07), ... (total=4) |
| CCAAC | PubMed | 4g92_ABC(7.23e-03), 6y36_ABC(3.65e-04), 6y37_ABC(7.13e-03) |
| TGCCAATCA | PubMed | 4g92_ABC(7.98e-07), 6y35_ABC(1.10e-04), 6y36_ABC(1.25e-08), ... (total=4) |
| CCAATCGCAT | PubMed | 4g92_ABC(9.64e-04), 6y35_ABC(1.84e-04), 6y36_ABC(2.66e-08), ... (total=4) |
| GCCAAT | PubMed | 4g92_ABC(1.63e-04), 6y35_ABC(1.18e-03), 6y36_ABC(9.19e-07), ... (total=4) |
| CAATT | PubMed | 4g92_ABC(7.13e-03), 6y35_ABC(1.40e-04), 6y36_ABC(3.68e-04), ... (total=4) |
| GCCAA | PubMed | 4g92_ABC(7.23e-03), 6y36_ABC(3.65e-04), 6y37_ABC(7.13e-03) |
| GCAATGA | PubMed | 4g92_ABC(9.50e-03), 6y35_ABC(3.53e-03), 6y36_ABC(3.47e-03), ... (total=4) |
| CTGATTGGC | PubMed | 4g92_ABC(7.98e-07), 6y35_ABC(1.10e-04), 6y36_ABC(1.25e-08), ... (total=4) |
Dendrogram of similar interfaces ?
matrix format------RT +-----------------------------7lya_E ! ------RT --7 +--------------------------7zs9_e ! ! ------RT +--6 +-------------------------7wlr_E ! ! --IT--RA +-5 +------7k78_E ! +------------2 RAETRT-- ! ! +------4ne1_p +-----4 ------RA ! +6t7a_C ! +--------------1 ------RT +----3 +7lyb_G ! ------RT +--------------1u35_G |
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updated Fri Sep 13 18:15:31 2024