interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF NO FACTOR PROTEIN-DNA COMPLEX
(Nucleoid occlusion factor SlmA)
referenceProc.Natl.Acad.Sci.USA 110 10586 2013
sourceVibrio cholerae O1 biovar El Tor
experimentX-ray (resolution=2.45, R-factor=0.225)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
multimeric complexes4gct_ABCD 5haw_AB
reference complex5haw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSEAYR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.517 n_of_columns=6 specificity:   
A |   0  16  24  24   0  13
C |   0  13  24  24   0  13
G |   0  13  24  24  96  16
T |  96  54  24  24   0  54
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updated Thu Sep 12 19:23:59 2024