interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF NO FACTOR PROTEIN-DNA COMPLEX
(Nucleoid occlusion factor SlmA)
referenceProc.Natl.Acad.Sci.USA 110 10586 2013
sourceVibrio cholerae O1 biovar El Tor
experimentX-ray (resolution=2.45, R-factor=0.225)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSEAYR

Estimated binding specificities ?

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# IC=4.434 IC/col=0.739 n_of_columns=6 specificity:   
A |  96   0  24  13  54  96
C |   0  96  24  13  16   0
G |   0   0  24  16  13   0
T |   0   0  24  54  13   0
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updated Mon Dec 16 23:28:43 2024