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3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Wed Jul 30 01:17:48 2025

structure name	STRUCTURE AND CONFORMATIONAL CHANGE OF A REPLICATION PROTEIN A HETEROTRIMER BOUND TO SSDNA
reference	Pavletich et al. 'Genes 26 2337 2012
source	USTILAGO MAYDIS
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Nucleic acid-binding proteins;
reference complex	4gnx_A 4gnx_B 4gnx_Z
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gop_A interface= mekptplinssmlgqyvgqtvrivgkvhkvtgntllmqtsdlgnveiamtpdsdvssstfvevtgkvsdagssfqanqirefttvdvdltlvenvvqisaafpnlfsd > 4gop_Y interface=1,32,65,82,84,86,93,96, NtlrpvtirqilnaeqphpdaefildgaelgQltfvavvrnisrnatnvaysvedgtgqievrqWldaseirnnvyvrvlgTlKsFqnrrsiSsgHmrpvidynevmfhrleavhahlqvtr > 4gop_Z interface=27,29,38,55,56,78,83,86,158,160,176,178,203,207,213,215,216,256,258,260,280,288,289,291,294,297,306,332,334,336,338,347,351,353,398,400,405,407, iypieglspyqnrwtikarvtsksdiRhWsnqrgegkLfsvnllddsgeikatgFNdavdrfypllqenhvyliskaRvniaKkqFsnlqneyeitfensteieectdatdvpevkyefvrinelesveanqqcdvigildsygelseivskasqrpVqKreltlvdqgnrsvklTlWgktaetfptnagvdekpvlafkgvKvgdFggrslSmFSsstmlinpditeshvlrgwydndgahaqfqpytngggagAnMaErrtivqvkdenlgmsekpdYfnvratvVYiKqeNlyYtacasegcNkkvnldhennwrcekcdrsyatpeyRyIlStNvadatgqmWlsgFnEdatqligmsagelhklreesesefsaalhraanrmymfncrakmDtFndtaRvRytisraapvdfakagmelvdairaym