4gnx_Z : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF U. MAYDIS REPLICATION PROTEIN A BOUND TO SSDNA (PUTATIVE UNCHARACTERIZED PROTEIN)
reference	Pavletich et al. 'To ? ? ?
source	USTILAGO MAYDIS
experiment	X-ray (resolution=2.80, R-factor=0.222)
structural superfamily	Nucleic acid-binding proteins;
sequence family	Replication factorA C terminal domain; OBfold nucleic acid binding domain;
multimeric complexes	4gnx_AZ 4gnx_BY 4gnx_CX 4gop_AYZ
redundant complexes	4gop
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gnx_Z interface=27,29,38,55,56,78,83,86,158,160,176,178,203,207,213,215,216,256,258,260,279,280,288,289,291,294,297,306,332,334,336,338,347,351,353,398,400,405,407, iypieglspyqnrwtikarvtsksdiRhWsnqrgegkLfsvnllddsgeikatgFNdavdrfypllqenhvyliskaRvniaKkqFsnlqneyeitfensteieectdatdvpevkyefvrinelesveanqqcdvigildsygelseivskasqrpVqKreltlvdqgnrsvklTlWgktaetfptnagvdekpvlafkgvKvgdFggrslSmFSsstmlinpditeshvlrgwydndgahaqfqpytngggagAnMaErrtivqvkdenlgmsekpDYfnvratvVYiKqeNlyYtacasegcNkkvnldhennwrcekcdrsyatpeyRyIlStNvadatgqmWlsgFnEdatqligmsagelhklreesesefsaalhraanrmymfncrakmDtFndtaRvRytisraapvdfakagmelvdairaym

  
  --------------------------------------KT------NT------------RTIT--WTTTFTMTRTRTDTYTRTRT   L       +-----------------------------6i52_C    
                                                                                                 +-1 
  ------------------------------------KG--YTYGRT--KGSGLGKGSGEG----RT--MTFT------KG------   L   +-2 +-----------------------------6d6v_D    
                                                                                               ! ! 
  ----NA--------------------------------------------------------------------------------   L --3 +-----------------------------7ypo_D    
                                                                                               ! 
  KTNT--TTWTRTRTITYTETRTWTTTNTNTMTQTLT--------------------------------------------------   L   +-----------------------------6irq_A

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updated Mon Jun 29 18:00:36 2026