4gnx_Z : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF U. MAYDIS REPLICATION PROTEIN A BOUND TO SSDNA (PUTATIVE UNCHARACTERIZED PROTEIN)
reference	Pavletich et al. 'To ? ? ?
source	USTILAGO MAYDIS
experiment	X-ray (resolution=2.80, R-factor=0.222)
structural superfamily	Nucleic acid-binding proteins;
sequence family	Replication factorA C terminal domain; OBfold nucleic acid binding domain;
multimeric complexes	4gnx_AZ 4gnx_BY 4gnx_CX 4gop_AYZ
redundant complexes	4gop
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gnx_Z interface=27,29,38,55,56,78,83,86,158,160,176,178,203,207,213,215,216,256,258,260,279,280,288,289,291,294,297,306,332,334,336,338,347,351,353,398,400,405,407, iypieglspyqnrwtikarvtsksdiRhWsnqrgegkLfsvnllddsgeikatgFNdavdrfypllqenhvyliskaRvniaKkqFsnlqneyeitfensteieectdatdvpevkyefvrinelesveanqqcdvigildsygelseivskasqrpVqKreltlvdqgnrsvklTlWgktaetfptnagvdekpvlafkgvKvgdFggrslSmFSsstmlinpditeshvlrgwydndgahaqfqpytngggagAnMaErrtivqvkdenlgmsekpDYfnvratvVYiKqeNlyYtacasegcNkkvnldhennwrcekcdrsyatpeyRyIlStNvadatgqmWlsgFnEdatqligmsagelhklreesesefsaalhraanrmymfncrakmDtFndtaRvRytisraapvdfakagmelvdairaym

  
  --------RTWTLT--------FTNT--------RT--KTFT--------------VTKT----TTWTKT--FT----ST--FTSTATMTETDTYTVTYTKTNTYTNTRTITSTNTWT--FTET------DTFTRTRT   L                   +---------------4gnx_Z    
                                                                                                                                                         +---------1 
  ----------------------------------------------------------------------------------------------------KT----NTRTIT----WTTTFT--MTRTRTDTYTRTRT   L       +-2         +---------------6i52_C    
                                                                                                                                                       ! ! 
  --RTTTKT------TTATFTNT--------------------------------------------------------------------------------------------------------------------   L     +-3 +-------------------------6bhx_B    
                                                                                                                                                     ! ! 
  KTNT------------TTWTRT----RTITYTET--RTWT--TTNTNTMTQTLT------------------------------------------------------------------------------------   L   +-4 +---------------------------6irq_A    
                                                                                                                                                   ! ! 
  ------------------------------------------------------TTDT--QCHCFTKTTGRC--QC--LG--KGDG----------------------------------------------------   L --5 +----------------------------7cuh_A    
                                                                                                                                                   ! 
  ----------------------------------------------------------------------KTFT--NT--QT--------------------------------------------------------   L   +----------------------------6i52_B

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updated Fri Sep 13 18:17:58 2024