3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF U. MAYDIS REPLICATION PROTEIN A BOUND TO SSDNA
(PUTATIVE UNCHARACTERIZED PROTEIN)
referencePavletich et al. 'To ? ? ?
sourceUSTILAGO MAYDIS
experimentX-ray (resolution=2.80, R-factor=0.222)
structural superfamilyNucleic acid-binding proteins;
sequence familyOBfold nucleic acid binding domain;
multimeric complexes4gnx_AZ 4gnx_BY 4gnx_CX 4gop_AYZ
redundant complexes4gop_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----------------------------------KT--FT----NT--QT--   L       +-----------------------------6i52_B    
                                                               +-1 
  ------------------FG----WA------------YG----EG--HG--       +-2 +-----------------------------8d0b_B    
                                                             ! ! 
  EGTGYG--SG--DGKGATFTSGVGKG----KT------YG----NGAG--RT   L --3 +-----------------------------1s40_A    
                                                             ! 
  ------KG--WTYT--KGNG--YG--RTIG--KG--DA--LTYAEG--IG--   L   +-----------------------------7cuh_A

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updated Wed Dec 18 00:32:50 2024