4kpy_B : 3D-footprint complex

structure name	DNA BINDING PROTEIN AND DNA COMPLEX STRUCTURE (Uncharacterized protein)
reference	Sheng et al. Proc.Natl.Acad.Sci.USA 111 652 2014
source	Thermus thermophilus
experiment	X-ray (resolution=2.41, R-factor=0.193)
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain 502;
multimeric complexes	3hk2_AB 3hvr_AB
reference complex	4ncb_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kpy_B interface=41,42,45,57,259,435,436,439,538,600,601,605,637, hlgktevflnrfalrplnpeelrpwrlevvldpppgreevYPllAqvarraggvtvRmgdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleawlaqghplpkrvrnaydrrtwellrlgeedpkelpgglslldyhaskgrlqgreggrvawvadpkpiphltgllvpvltLedlheeelalslpweerrrrtreiaswigrrlglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkalllreglpsqilnvplreeerHRweNallgllakaglqvvalsgaypaelavgfdaggresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsrvlllrdgRvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledktfllltvhrdFRgtpRplklvheagdtplealahqifhltrlypasgFafprlpaplhladrlvkevgrlgirhlkevdreklffv
interface signature	YPARLHRNRFRRF

Estimated binding specificities ?

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# IC=5.005 IC/col=0.334 n_of_columns=15

specificity:

A |   0  24   7   7   7  75  24  24  24  24  24  24  24  24   0
C |   0  24   7   7   7   7  24  24  24  24  24  24  24  24   0
G |  96  24  73  75   9   7  24  24  24  24  24  24  24  24   0
T |   0  24   9   7  73   7  24  24  24  24  24  24  24  24  96

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updated Mon Dec 18 10:49:29 2023