Estimated binding specificities ?

structure nameCOMPLEX STRUCTURE OF ARTERIVIRUS NONSTRUCTURAL PROTEIN 10 (HELICASE) WITH DNA
(Replicase polyprotein 1ab)
referenceDeng et al. 'Nucleic 42 3464 2014
sourceEquine arteritis virus
experimentX-ray (resolution=2.65, R-factor=0.247)
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;
sequence familyViral Superfamily 1 RNA helicase 35;
multimeric complexes4n0o_AE 4n0o_CG
links to other resourcesNAKB PDBSum PDIdb DNAproDB
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# IC=5.293 IC/col=0.882 n_of_columns=6 specificity:   
A |   2   0   0  24  12   0
C |   2   0   0  24  12   0
G |   4   0   0  24  12   0
T |  88  96  96  24  60  96
scan!

Dendrogram of similar interfaces ?

matrix format
  
  YTRT--QT----VTYT--DT--RT                +--------------------4n0o_E    
                                     +----1 
  ----RC----QT------------         +-2    +--------------------6m6b_M    
                                   ! ! 
  ------------------KGHA--       +-3 +-------------------------7o4j_7    
                                 ! ! 
  ----------------KG------     --4 +--------------------------7nvv_7    
                                 ! 
  --------KC--------------       +----------------------------7aud_E

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updated Sun Aug 3 08:16:30 2025