interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A 4cyc_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKIQNMK/NNIR

Estimated binding specificities ?

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# IC=8.562 IC/col=0.856 n_of_columns=10 specificity:   
A |  14  24  66   0  83   6  96   0   0  70
C |  64  24   6   0   6   0   0   0  96   6
G |  12  24  12   0   1   1   0   0   0   8
T |   6  24  12  96   6  89   0  96   0  12
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updated Wed Jun 24 22:44:55 2026