interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKIQNMK/NNIR

Estimated binding specificities ?

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# IC=8.653 IC/col=0.865 n_of_columns=10 specificity:   
A |   6   0  96   0  89   6  96   8  24   6
C |   6   0   0   6   0   1   0   6  24  12
G |  12  96   0   0   0   6   0   6  24  66
T |  72   0   0  90   7  83   0  76  24  12
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updated Mon Sep 9 23:39:33 2024