interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A 4cyc_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKIQNMK/NNIR

Estimated binding specificities ?

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# IC=8.671 IC/col=0.867 n_of_columns=10 specificity:   
A |   6   0  96   0  90   6  96   6  24  18
C |   6   0   0   0   0   6   0  12  24  12
G |   0  96   0   0   0   6   0  12  24  54
T |  84   0   0  96   6  78   0  66  24  12
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updated Mon Jan 5 11:07:39 2026