interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKIQNMK/NNIR

Estimated binding specificities ?

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# IC=8.658 IC/col=0.866 n_of_columns=10 specificity:   
A |   8   0  96   0  90   6  96  12  24   6
C |   6   0   0   0   0   6   0   8  24  14
G |   6  96   0   0   0   6   0   6  24  64
T |  76   0   0  96   6  78   0  70  24  12
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updated Wed Jul 30 02:54:31 2025