interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A 4cyc_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM/NNR

Estimated binding specificities ?

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# IC=10.006 IC/col=1.001 n_of_columns=10 specificity:   
A |   0   0  96   6   6   0  96   6   0   6
C |   0   0   0   6  12   6   0  18   0   6
G |   0  96   0   6   6   6   0   0  96  72
T |  96   0   0  78  72  84   0  72   0  12
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updated Mon Jan 5 11:07:49 2026