interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM/NNR

Estimated binding specificities ?

readout + contactlogo
# IC=9.873 IC/col=0.987 n_of_columns=10 specificity:   
A |   0   0  96   9   7  12  96   4   0   4
C |   0   0   0   4   4   4   0  19   0   4
G |   0  96   0   4   4   4   0  11  96  76
T |  96   0   0  79  81  76   0  62   0  12
scan!

home
updated Fri Dec 13 21:25:59 2024