4uus_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
reference	Ortiz-Lombardia et al. Structure 23 270 2015
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.55, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1puf_B 4cyc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4uus_E interface=2,44,47,48,51, gRqtytryqtlelekefhtnhyltrrrriemahalslterqikIwfQNrrMklkkeiqaikelne > 4uus_F interface=43,47,51, fskqaseilneyfyshlsnpypseeakeelarkcgitvsqvsNwfgNkriRykknigkaqeeanly
interface signature	RIQNM/NNR

Estimated binding specificities ?

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# IC=10.051 IC/col=1.005 n_of_columns=10

specificity:

A |   0   0  96  12   0   6  96   6   0  12
C |   0   0   0   6   6   0   0  24   0   6
G |   0  96   0   6   6   0   0  12  96  72
T |  96   0   0  72  84  90   0  54   0   6

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updated Mon Sep 9 23:39:42 2024