interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
referenceOrtiz-Lombardia et al. Structure 23 270 2015
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.55, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 4cyc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM/NNR

Estimated binding specificities ?

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# IC=9.827 IC/col=0.983 n_of_columns=10 specificity:   
A |   6   0  60   0  78  72  66   0   0  96
C |  90  96   6   0   6   6  12   0  96   0
G |   0   0  24   0   6   6   6   0   0   0
T |   0   0   6  96   6  12  12  96   0   0
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updated Wed Jul 30 02:54:39 2025