| structure name | CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS CARH BOUND TO ADENOSYLCOBALAMIN AND A 26-BP DNA SEGMENT (Light-dependent transcriptional regulator CarH) |
| reference | Drennan et al. Nature 526 536 2015 |
| source | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) / Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) |
| experiment | X-ray (resolution=3.89, R-factor=0.251) |
| structural superfamily | Putative DNA-binding domain;Cobalamin vitamin B12-binding domain; |
| sequence family | MerR family regulatory protein; |
| multimeric complexes | 5c8e_AF 5c8e_BC 5c8e_EG |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | ERQRRH |
Estimated binding specificities ?
| contact |  |
A | 19 0 96 17 69 C | 8 0 0 54 8 G | 8 96 0 17 8 T | 61 0 0 8 11scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: CARH | ||
| TACAN | PubMed | 5c8e_AF(1.01e-03), 5c8e_BC(1.24e-02) |
Dendrogram of similar interfaces ?
matrix formatRGRTYTKT---------- L +7tea_B +--1 RGHTHCYG---------- L +----------2 +1r8d_B ! ! RCRT-------------- +---------------3 +--7tec_A ! ! RART-------------- --4 +-------------4r24_B ! --------RGEGSGKGKG +-----------------------------1m5r_B |
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updated Wed Dec 18 01:24:41 2024