| structure name | STRUCTURE OF A TRANSCRIPTION FACTOR AND DNA COMPLEX (Transcription factor MYC2) |
| reference | Lian et al. 'Cell 19 1334 2017 |
| source | Arabidopsis thaliana |
| experiment | X-ray (resolution=2.70, R-factor=0.209) |
| structural superfamily | HLH, helix-loop-helix DNA-binding domain; |
| sequence family | Helixloophelix DNAbinding domain; |
| multimeric complexes | 5gnj_AB 5gnj_GIN |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | HERR |
Estimated binding specificities ?
| contact |  |
A | 67 0 96 9 9 C | 9 96 0 69 9 G | 9 0 0 9 69 T | 11 0 0 9 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MYC2 | ||
| CACATG | PubMed | 5gnj_I(2.62e-03), 5gnj_AB(1.16e-04), 5gnj_GIN(7.77e-05) |
| CANNTG | PubMed | 5gnj_AB(6.34e-03), 5gnj_GIN(3.42e-03) |
| ATACGTGT | PubMed | 5gnj_I(1.62e-06), 5gnj_AB(1.22e-06), 5gnj_GIN(1.87e-04) |
| AACGTG | PubMed | 5gnj_I(3.55e-04), 5gnj_AB(1.83e-05), 5gnj_GIN(7.27e-06) |
Dendrogram of similar interfaces ?
matrix formatHG----ETRCRG L +5gnj_I +-1 HGNT--ECRCRG L +-2 +1nkp_E ! ! HGNT--ECRCRG L +-------3 +1nkp_A ! ! HGNTMTEARCRG L +----4 +-1nlw_D ! ! --RG-------- L --5 +---------6od3_F ! HGNTLGECRCRC L +--------------5i50_B |
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updated Fri Sep 13 19:38:07 2024