5kgf_ABCDEFGH
citing 3d-footprint
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structure name
STRUCTURAL MODEL OF 53BP1 BOUND TO A UBIQUITYLATED AND METHYLATED NUCLEOSOME, AT 4.5 A RESOLUTION
reference
Rubinstein et al. Nature 536 100 2016
source
HOMO SAPIENS / XENOPUS LAEVIS
experiment
X-ray (resolution=4.54, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
5gtc_H
5o9g_E
5o9g_F
5o9g_G
5z3u_A
6a5l_d
6buz_H
6c0w_H
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6see_H
6t7a_H
6upk_H
6x0n_f
6x59_H
6y5d_H
6yov_C
7at8_D
7d1z_H
7e8d_H
7eg6_A
7egp_S
7jzv_N
7k5x_H
7k60_H
7k63_H
7nkx_a
7nkx_f
7otq_E
7pet_H
7scy_H
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8h0v_h
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 5kgf_A interface=5,6, vkkpHRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 5kgf_B interface=16,26, rvlrdniqgitkpaiRrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5kgf_C interface=3,34, kaRaraksrssraglqfpvgrvhrllrrgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkkte > 5kgf_D interface= gkKrkrsrkesysvyvykvlkqvhpdtgisskaMgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk > 5kgf_E interface=4,5,28, kkpHRyrpgtvalreirryqkstelliRklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 5kgf_F interface=26, rvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5kgf_G interface=3, kaRaraksrssraglqfpvgrvhrllrrgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkkte > 5kgf_H interface=3, rkRsrkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk
3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
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updated Tue Sep 10 05:57:18 2024