6y5d_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1eqz_ABCDEFGH 2cv5_ABCDEFGH 5gt0_ABCDEFGH 5kgf_ABCDEFGH 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6e0c_ABCDEFGH 6e0p_ABCDEFGH 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6m4d_ABCDEFGH 6m4g_ABCDEFGH 6m4h_ABCDEFGH 6o1d_ABCDEFGH 6r0c_ABCDEFGH 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 6t90_ABCDEFGHKL 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6y5d_ABCDEFGH 6y5d_KMNOPQRST 6yov_ABCDEFGHKL 7a08_bcdefghi 7bwd_ABCDEFGHLM 7by0_ABCDEFGH 7cow_ABCDEFGHKLMNOPQRST 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7ea8_ABCDEFGH 7jo9_ABCDEFGH 7joa_ABCDEFGH 7jzv_NOPQnopq 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7lya_ABCDEFGH 7lyb_ABCDEFGH 7lyc_ABCDEFGH 7nl0_ABCDEFGH 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS 7pii_ABCDEFGH 7r5r_ABCDEFGH 7tan_ABCDEFGH 7u0j_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7xvl_ABCDEFGH 7xvl_KLMNOPQR 7xvl_UVWXYZab 7xvl_efghijkl 7xvm_ABCDEFGH 7xx5_ABCDEFGH 7xx5_KLMNOPQR 7xx6_AXY 7xx6_BCDEFGHo 7xx6_KLMNOPQR 7xx6_UVWZabp 7xx6_efghijkl 7ywx_ABCDEFGLNVW 8dk5_ABCDEFGH 8evg_ABCDEFGH 8g57_ABCDEFGH 8hak_ABCDEFGH 8jbx_ABCDEFGH 8jh2_gh 8ox0_ABCDEFGH 8pkj_ABCDEFGH 8smw_ABCDEFGH 8smx_ABCDEFGH 8smy_ABCDEFGH 8smz_ABCDEFGH 8sn0_ABCDEFGH 8sn1_ABCDEFGH 8sn2_ABCDEFGH 8sn6_ABCDEFGH 8sn7_ABCDEFGH 8sn9_ABCDEFGH 8sna_ABCDEFGH 8syp_ABCDEFGH 8txw_ABCDEFGH 8txx_ABCDEFGH 8u13_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH 8vfx_ABCDEFGH 8yti_ABCDEFGH 8yti_KLMNOPQR 8yti_UV
redundant complexes	5gt0_D 5xf3_H 5xf4_H 6e0c_D 6la8_R 7jo9_H 7joa_H 7k5y_D 7k61_H 7pf2_H 7pf6_H 7pfd_D 7pfe_d 7pfu_R 7tan_D 7u0j_H 7u50_H 7xx5_R 8evg_H 8evh_H 8hak_D 8ham_H 8osj_D 8pki_D 8smy_D 8smz_H 8sn2_D 8sn8_H 8txw_D 8u13_H 8vg1_H 8yv8_H 1eqz 2cv5 5kgf 5xf5 6buz 6c0w 6e0p 6l9z 6la2 6la9 6lab 6ler 6m3v 6m44 6m4d 6m4g 6m4h 6o1d 6r0c 6se0 6se6 6see 6sef 6seg 6t79 6t7a 6t7b 6t7c 6t7d 6t90 6upk 6upl 6x59 6x5a 6xjd 6yov 7a08 7bwd 7by0 7cow 7dbp 7e8d 7ea8 7jzv 7k5x 7k60 7k63 7lya 7lyb 7lyc 7nl0 7pet 7peu 7pev 7pew 7pex 7pey 7pez 7pf0 7pf3 7pf4 7pf5 7pfa 7pfc 7pff 7pft 7pfv 7pfw 7pfx 7pii 7r5r 7u0g 7u0i 7u46 7u47 7u4d 7u51 7u52 7u53 7uv9 7xvl 7xvm 7xx6 7ywx 8atf 8dk5 8evi 8evj 8g57 8hag 8hah 8hai 8haj 8hal 8han 8jbx 8jh2 8jh3 8jh4 8osk 8osl 8ots 8ox0 8ox1 8pkj 8smw 8smx 8sn0 8sn1 8sn3 8sn4 8sn5 8sn6 8sn7 8sn9 8sna 8sps 8spu 8syp 8txv 8txx 8u14 8upf 8vfx 8vfy 8vfz 8vg0 8vg2 8yti
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6y5d_H interface=3, rsRkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa

  
  RG------           +-----------------------------7ccr_H    
                   +-8 
  ----RA--       +-9 +-----------------------------7e9c_F    
                 ! ! 
  ----RC--       ! +-----------------------------7yqk_C    
                 !  
  ----RT--       !                             +8u14_G    
                 !                     +-------2 
  ----RG--       !                     !       +8upf_G    
               -10             +-------4 
  ----RARA       !             !       !       +6a5l_g    
                 !          +--5       +-------1 
  ----RG--       !          !  !               +8txv_G    
                 !      +---6  ! 
  ----RC--       !      !   !  +---------------7ux9_E    
                 !      !   ! 
  ----RT--       +------7   +------------------6px1_A    
                        ! 
  ----RGRG              !                      +8kcb_A    
                        +----------------------3 
  --HGRG--                                     +8rbx_V

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updated Sat Jan 10 13:09:26 2026