| structure name | CRYSTAL STRUCTURE OF SMAD4-MH1 BOUND TO THE GGCGC SITE. (MH1 domain of human Smad4) |
| reference | Kaczmarska et al. 'Nat 8 2070 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.05, R-factor=0.223) |
| structural superfamily | SMAD MH1 domain; |
| sequence family | MH1 domain; |
| multimeric complexes | 3qsv_AD 3qsv_BC |
| redundant complexes |  3qsv_D
5mez_A
5mf0_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SMAD4 | ||
| GTCTAGAC | PubMed | 3qsv_AD(2.44e-14), 3qsv_BC(6.88e-15), 5mez_A(1.02e-02), ... (total=4) |
| CAGAC | PubMed | 3qsv_AD(2.42e-03), 3qsv_BC(1.79e-03), 3qsv_A(1.72e-04) |
Dendrogram of similar interfaces ?
matrix format--RGQC--KG L +5nm9_A +-1 DCRGQC--KG L +--------3 +6tbz_A ! ! --RGQA--KA L ! +6h3r_A --5 DCRGQC--KG L ! +-6fzt_A +-------4 --RGQAHTKG L ! +5x6g_A +-2 DCRGQC--KG L +6zmn_B |
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updated Fri Sep 13 20:00:52 2024