5oqm_7AMOQRU : 3D-footprint complex

structure name	STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Cyclin-like;Zinc beta-ribbon;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;
reference complex	5oqj_7 5oqj_M 5oqj_R 5oqj_U 5oqj_X 5oqm_Q 5oqm_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5oqm_7 interface= rpyqekslskmfgngrarsgiivlpcgagktlvgitaactikksvivlctssvsvmqwrqqflxxxxxxxxxxxxxxxxxxxxxxxxxxlvvstysmvanxxxxxxxxxxxxxxxxxxxwgfiildevhvvpaamfrrvvstiaahaklgltatlvreddkigdlnfligpklyeanwmelsqkghianvqcaevwcpmtaefyqeylretarkrmllyimnptkfqacqfliqyherrgdkiivfsdnvyalqeyalkmgkpfiygstpqqermnilqnfqyndqintiflskvgdtsidlpeatcliqisshygsrrqeaqrlgrilrakrrndegfnaffyslvskdtqemyystkrqaflvdqgyafkvithlhgmenipnlayasprerrellqevllkneea > 5oqm_A interface= gqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpsrggcgntqptirkdglklvgswkkpelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfsqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtrhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmideeslvk > 5oqm_M interface= pnlnivltcpeckvyppkiverfsegdvvcalcglvlsdklvdtrsewrtfnplldgnnlstrigkgettdmrftkelnkaqgknvmdkkdnevqaafakitmlcdaaelpkivkdcakeayklchdektlkgksmesimaasiligcrraevartfkeiqslihvktkefgktlnimknilrgksqnltyiprfcshlglpmqvttsaeytakkckeikeiagkspitiavvsiylnillfqipitaakvgqtlqvtegtiksgykilyehrdklvdp > 5oqm_O interface=9,11,39,54,56,62,64,99,101,130,145,147,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFpgliyrmvkpkivlLiFvsgkivlTgakqreeiyqafeaiypvlsefrkm > 5oqm_Q interface= fikrdrmrRnFlrmreynefplraipkedlenmrthllKfqskkkinpvtdfhLpVrlhrkRkTrqlkvldenakklrfeefypwvmedfyntwvgsyEaGnsdsyvllsveddgsftmipadkvykftArnkyatxxxxxxxxXxXx > 5oqm_R interface= dldlersnRqVwlvrlpmflaekwrlgkirinkskitlLlnepheydleltkkVvEneyvfTeQtipkktaivgtvchecqvmpyhkiveqrrnivklNnKerittldetvgvtmshtgmsmrsdnsnfLkvmpkkeildylfkLfDeydywslKglkertrqpeahlkecldkvatlvkkgpyafkytl > 5oqm_U interface= snaeasrvYeIivesvvnevredfenagideqtlqdlkNiwqkkltenlmlclYdKvtrtkArWkcslkdgvvtinrndytfqkaqveaewv
interface signature	///NVFLFVTNVFLFT/RFKLVRTEGAXX/RVLVETQNKLLDK/YINYKAW

Estimated binding specificities ?

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# IC=5.300 IC/col=0.757 n_of_columns=7

specificity:

A |  67   0   9  96   0  24   9
C |   9   0  11   0   0  24   9
G |   9   0   9   0   0  24  11
T |  11  96  67   0  96  24  67

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updated Sat Dec 14 06:45:22 2024