5zjq_AB : 3D-footprint complex

structure name	STRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'RED14' DNA SEQUENCE
reference	Baburajendran et al. 'Cell 24 2221 2018
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.44, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	4cyc_B 5zjt_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5zjq_A interface=6,48,51,52,55, ewtkkRkpyskfqtlelekeflfnayvskqkrwelarnlqlterqvkIwfQNrrMknkknsqr > 5zjq_B interface=3,5,50,54,57,58, arRkRrnfskqaseilneyfyshlsnpypseeakeelarkcgitvsqvsNwfgNkrIRykknigkaqeeanly
interface signature	RIQNM/RRNNIR

Estimated binding specificities ?

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# IC=11.841 IC/col=1.076 n_of_columns=11

specificity:

A |   9  11  96   0  78  96  96   0   0  96   0
C |  19  67   0   0   9   0   0   0  96   0  10
G |   9   9   0   0   0   0   0   0   0   0   0
T |  59   9   0  96   9   0   0  96   0   0  86

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updated Thu Jun 25 11:47:32 2026