| structure name | STRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'BLACK14' DNA SEQUENCE (HOMEOBOX PROTEIN ABDOMINAL-B) |
| reference | Baburajendran et al. 'Cell 24 2221 2018 |
| source | DROSOPHILA MELANOGASTER |
| experiment | X-ray (resolution=2.40, R-factor=0.237) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 5zjq_AB 5zjr_AB 5zjs_AB |
| redundant complexes |  5zjq_A
5zjs_A
5zjr
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RIQNM |
Estimated binding specificities ?
| contact |  |
A | 6 78 0 78 78 78 C | 6 6 0 6 6 6 G | 6 6 0 6 6 6 T | 78 6 96 6 6 6scan! |
Dendrogram of similar interfaces ?
matrix format--------------------------ITKGNARGRA-- L +-----------------------------1zq3_P ! --RT----------------------VTKGNA--KA-- L ! +2lkx_A ! +-2 --RT----------------------IAQCNAYA--RT L ! +--------4 +1nk2_P ! ! ! --RT----------------------NT--NAITRG-- ! +------7 +5zjt_B ! ! ! --RT----------------------IAKGNA------ L ! ! +---------6m3d_C ! +----9 --RT----------------------VAQTNA------ L ! ! ! +3lnq_A ! ! ! +-1 --RA--------------------RCVTCTNAQTRC-- L ! +-11 +---------------5 +1au7_A -16 ! ! ! --RT----------------------NT--NAIARG-- L ! ! ! +1b72_B ! +-13 ! --RA----------------------YAQTNAAARG-- L ! ! ! +---------------------6wig_A ! ! ! RC----RT------------------NCSTNARG---- L ! ! +----------------------1mnm_C ! ! --RT----------------------TTQCNA------ L ! ! +3a01_E ! +-14 +--3 --RT----------------------ITQCNAACRG-- L ! ! ! +---------6 +6a8r_A ! ! ! ! ! ------------------------RCVACTNAQA---- L ! ! ! +-------8 +--7xrc_C ! ! ! ! ! ------------------------RTVAITNAMCRG-- L +-15 ! +-10 +------------1yrn_A ! ! ! ! ----NGRGTG----LG----LC---------------- ! +-12 +--------------------6vjw_A ! ! ----NGRGTG----LG----LCRG-------------- ! +----------------------7kz0_A ! --YT--RT--TGRG--STATEA--ST------------ L +---------------------------6xg8_A |
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updated Fri Sep 13 21:12:11 2024