interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'MAGENTA14' DNA SEQUENCE
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=3.03, R-factor=?)
structural superfamilyHomeodomain-like;
reference complex1puf_B 5zjt_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNRM/RRNNIR

Estimated binding specificities ?

readout + contactlogo
# IC=9.583 IC/col=0.958 n_of_columns=10 specificity:   
A |   0  24  48   0  72  24  96   0   0  96
C |   0  24  24   0  12   0   0   0  96   0
G |   0  24  12   0   0   0   0   0   0   0
T |  96  24  12  96  12  72   0  96   0   0
scan!

home
updated Tue Sep 10 10:41:57 2024