6ama_L : 3D-footprint complex

structure name	STRUCTURE OF S. COELICOLOR/S. VENEZUELAE BLDC-SMEA-SSFA COMPLEX TO 3.09 ANGSTROM (Putative DNA-binding protein)
reference	'Nat 9 1139 2018 X-RAY DIFFRACTION
source	Streptomyces venezuelae
experiment	X-ray (resolution=3.09, R-factor=0.215)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR family regulatory protein;
multimeric complexes	6ama_ABCDGHKLOPY 6amk_AB
redundant complexes	6amk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ama_L interface=16,18,22,38, eplltpaevatmfrvDpKtvtRwakagkltsirtlggHrryreaevrallagip
interface signature	DKRH

Estimated binding specificities ?

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# IC=6.080 IC/col=0.676 n_of_columns=9

specificity:

A |   0  78   6   0   6   6  24  24   6
C |   0   6  78  96  78   6  24  24   6
G |   0   6   6   0   6  78  24  24   6
T |  96   6   6   0   6   6  24  24  78

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGHTHC----YG   L       +-----------------------------1r8d_B    
                       +-1 
  RGRTYT----RT   L   +-2 +-----------------------------4r4e_B    
                     ! ! 
  YTRTFC--KG--   L --3 +-----------------------------5d8c_A    
                     ! 
  ECQT--RGRTHT   L   +-----------------------------5c8e_C

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updated Sat Jan 10 09:44:23 2026