6cnd_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III NATURAL OPEN COMPLEX (NOC)
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
multimeric complexes	6cnb_ABEPRS 6cnc_ABEOPRS 6cnd_ABEPRS 6cnf_ABEPRS
reference complex	6cnb_R
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnd_R interface=41,43,45,223,276,278,306,321,323,329,365,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivseVaLeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeEtlqqrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvtgakseddsklasrkyariiqkigfaakftdfkiQNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	VLSENVFLFVQNVFPLFVT

Estimated binding specificities ?

contact

# IC=9.986 IC/col=0.384 n_of_columns=26

specificity:

A |  84   4  24  24  24   4  96   4   4  81   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  96
C |   4  81  24  24  24   4   0   4   7   7   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0
G |   4   7  24  24  24   9   0   7   4   4  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0
T |   4   4  24  24  24  79   0  81  81   4   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24   0

scan!

home
updated Sat Aug 2 10:37:05 2025