6cnd_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III NATURAL OPEN COMPLEX (NOC)
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnd_R interface=41,43,45,223,276,278,306,321,323,329,365,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivseVaLeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeEtlqqrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvtgakseddsklasrkyariiqkigfaakftdfkiQNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	VLSENVFLFVQNVFPLFVT

Estimated binding specificities ?

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# IC=10.068 IC/col=0.387 n_of_columns=26

specificity:

A |  81   4  24  24  24   4  96   7   4  84   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  96
C |   7  84  24  24  24   4   0   4   7   4   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0
G |   4   4  24  24  24   9   0   4   4   4  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0
T |   4   4  24  24  24  79   0  81  81   4   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24   0

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updated Tue Dec 17 03:36:03 2024