6cnf_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III ELONGATION COMPLEX
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
multimeric complexes	6cnb_ABEPRS 6cnc_ABEOPRS 6cnd_ABEPRS 6cnf_ABEPRS
reference complex	6cnb_R
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnf_R interface=41,42,43,45,223,224,227,276,278,306,321,323,329,331,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivseVALeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeETlqQrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	VALSETQNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=13.320 IC/col=0.493 n_of_columns=27

specificity:

A |  96  24  24  24  24  88  24  24  24  24  24  24  24   0  96   5   0  96  87   0  83  24  24   0  24  12  12
C |   0  24  24  24  24   4  24  24  24  24  24  24  24   0   0  87   0   0   5   0   4  24  24  12  24   8  10
G |   0  24  24  24  24   4  24  24  24  24  24  24  24   0   0   0   0   0   0   0   5  24  24  12  24   4  12
T |   0  24  24  24  24   0  24  24  24  24  24  24  24  96   0   4  96   0   4  96   4  24  24  72  24  72  62

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updated Sat Aug 2 10:37:32 2025