6cnf_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III ELONGATION COMPLEX
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnf_R interface=41,42,43,45,223,224,227,276,278,306,321,323,329,331,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivseVALeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeETlqQrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	VALSETQNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=13.459 IC/col=0.498 n_of_columns=27

specificity:

A |  96  24  24  24  24  92  24  24  24  24  24  24  24   0  96   6   0  96  87   0  88  24  24   0  24  11  11
C |   0  24  24  24  24   3  24  24  24  24  24  24  24   0   0  84   0   0   3   0   3  24  24  13  24  13   9
G |   0  24  24  24  24   1  24  24  24  24  24  24  24   0   0   3   0   0   3   0   3  24  24   7  24   7  11
T |   0  24  24  24  24   0  24  24  24  24  24  24  24  96   0   3  96   0   3  96   2  24  24  76  24  65  65

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updated Tue Dec 17 03:36:29 2024