6cnf_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III ELONGATION COMPLEX
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
multimeric complexes	6cnb_ABEPRS 6cnc_ABEOPRS 6cnd_ABEPRS 6cnf_ABEPRS
reference complex	6cnb_R
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnf_R interface=41,42,43,45,223,224,227,276,278,306,321,323,329,331,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivseVALeSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeETlqQrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	VALSETQNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=11.951 IC/col=0.543 n_of_columns=22

specificity:

A |  74  57  24  56  24  24   2  96   2   0  96   3   0  96  24  24  24  24  24  24  24   2
C |  14  12  24  14  24  24   2   0   2   0   0   2   0   0  24  24  24  24  24  24  24   2
G |   4  13  24  14  24  24   2   0   3   0   0  89   0   0  24  24  24  24  24  24  24   2
T |   4  14  24  12  24  24  90   0  89  96   0   2  96   0  24  24  24  24  24  24  24  90

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updated Mon Dec 18 14:41:26 2023