6cnf_R : 3D-footprint complex

structure name	YEAST RNA POLYMERASE III ELONGATION COMPLEX
experiment	NMR
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
sequence family	Transcription factor TFIID or TATAb; Transcription factor TFIIB repeat; TFIIB zincbinding;
multimeric complexes	6cnb_ABEPRS 6cnc_ABEOPRS 6cnd_ABEPRS 6cnf_ABEPRS
reference complex	6cnb_R
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6cnf_R interface=45,223,224,227,276,278,306,321,323,329,331,366,368,397,398,412,414,420,422, mpvcknchgteferdlsnanndlvckacgvvsednpivsevaleSreatlnnarrklravsyalhipeyitdaafqwyklalannfvqgrrsqnviasclyvacrkekthhmlidfssrlqvsvysigatflkmvkklhitelpladpslfiqhfaekldladkkikvvkdavklaqrmskdwmfegrrpagiagacillacrmnnlrrthteivavshvaeETlqQrlnefkntkaaklsvqkfrendvedgearppsfvknrkkesgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkmsgsprnlhllpttdtylskvsddpdnledvddeelnahllneeasklkeriwiglnadflleqeskrlkqeadia
interface signature	SETQNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=12.454 IC/col=0.566 n_of_columns=22

specificity:

A |  73  48  24  51  24  24   0  96   1   0  96   3   0  96  24  24  24  24  24  24  24   0
C |   7  16  24  11  24  24   0   0   0   0   0   3   0   0  24  24  24  24  24  24  24   0
G |   7  18  24  14  24  24   0   0   3   0   0  90   0   0  24  24  24  24  24  24  24   0
T |   9  14  24  20  24  24  96   0  92  96   0   0  96   0  24  24  24  24  24  24  24  96

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updated Thu Sep 12 22:58:58 2024