6dg0_A : 3D-footprint complex

structure name	MEC-8 C-TERMINAL RRM DOMAIN BOUND TO AGCACA (Mec-8 protein)
reference	Mackereth et al. 'To ? ? ?
source	Caenorhabditis elegans
experiment	X-ray (resolution=2.46, R-factor=0.238)
structural superfamily	RNA-binding domain, RBD;
sequence family	RNA recognition motif aka RRM, RBD, or;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dg0_A interface=4,6,8,33,44,68,73,75,77,78,79,81,82, aasTlFvAnlsaevnedtlrgvfkafsgftrlRlhnkngsavaFveysdlqkatqamislqgfqtanDrgglRiEyARNkMAdv
interface signature	TFARFDREARNMA

Estimated binding specificities ?

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# IC=6.663 IC/col=1.333 n_of_columns=5

specificity:

A |  96   0   0  96   0
C |   0   0  96   0  96
G |   0  96   0   0   0
T |   0   0   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----NCKGYTRC--------------------   L                 +----------1jj4_B    
                                         +-------------2 
  --------------------------PIVIRI       !             +----------2xhb_A    
                                       --3 
  SA----------YTLAKG--FTWCEA------   L   !                       +6uw0_B    
                                         +-----------------------1 
  --SC--------YGKGKGKGFTWCEA------   L                           +6uwj_A

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updated Fri Sep 13 21:32:09 2024