6dt1_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE LIGASE FROM BACTERIOPHAGE T4 COMPLEXED WITH DNA INTERMEDIATE (DNA LIGASE)
reference	Aihara et al. 'Nucleic 46 10474 2018
source	ENTEROBACTERIA PHAGE T4
experiment	X-ray (resolution=2.75, R-factor=0.172)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dt1_A interface=384,434,435,437, hmilkilneiasigstkqkqaileknkdnellkrvyrltysrglqyyikkwpkpgiatqsfgmltltdmldfieftlatrkltgnaaieeltgyitdgkkddvevlrrvmmrdlecgasvsiankvwpglipeqpqmlassydekginknikfpafaqlkadgarcfaevrgdelddvrllsragneylgldllkeelikmtaearqihpegvlidgelvyheqaevaesrtasngiankslkgtisekeaqcmkfqvwdyvplveiyslpafrlkydvrfskleqmtsgydkvilienqvvnnldeakviykkyidqglegiilknidglwenarsknlykfkevidvdlkivgiyphrkdptkaggfilesecgkikvnagSglkdkagvksheldrtrimenqnyyigkilececngwlksdgrtdyvklFLpIairlredktkantfedvfgdfhevtgl

  
  --RA----NG--------STFGLGIT                             +-----6dt1_A    
                                                      +--1 
  ------MG--------------FC--                          !  +-----6rar_I    
                                          +-----------3 
  RT--FT------RC--KG----FG--   L          !           ! +------6p0c_A    
                                   +------4           +-2 
  ----------------------FG--       !      !             +------6bkg_A    
                                 --5      ! 
  ----------NC----KG----QT--       !      +--------------------6iml_A    
                                   ! 
  ----NG--------RA----------   L   +---------------------------2owo_A

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updated Tue Dec 19 12:41:06 2023