3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

home
updated Tue Sep 10 13:48:54 2024

structure name	STRUCTURE OF A YEAST CLOSED COMPLEX WITH DISTORTED DNA (CCDIST)
experiment	NMR
structural superfamily	Cyclin-like;Zinc beta-ribbon;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;beta and beta-prime subunits of DNA dependent RNA-polymerase;
reference complex	5oqj_M 5oqj_O 5oqj_Q 5oqj_R 6gyk_U 6gym_W 7o4i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gym_7 interface= rpyqekslskmfgngrarsgiivlpcgagktlvgitaactikksvivlctssvsvmqwrqqflxxxxxxxxxxxxxxxxxxxxxxxxxxlvvstysmvanxxxxxxxxxxxxxxxxxxxwgfiildevhvvpaamfrrvvstiaahaklgltatlvreddkigdlnfligpklyeanwmelsqkghianvqcaevwcpmtaefyqeylretarkrmllyimnptkfqacqfliqyherrgdkiivfsdnvyalqeyalkmgkpfiygstpqqermnilqnfqyndqintiflskvgdtsidlpeatcliqisshygsrrqeaqrlgrilrakrrndegfnaffyslvskdtqemyystkrqaflvdqgyafkvithlhgmenipnlayasprerrellqevllkneea > 6gym_M interface= pnlnivltcpeckvyppkiverfsegdvvcalcglvlsdklvdtrsewrtfnplldgnnlstrigkgettdmrftkelnkaqgknvmdkkdnevqaafakitmlcdaaelpkivkdcakeayklchdektlkgksmesimaasiligcrraevartfkeiqslihvktkefgktlnimknilrgksqnltyiprfcshlglpmqvttsaeytakkckeikeiagkspitiavvsiylnillfqipitaakvgqtlqvtegtiksgykilyehrdklvdp > 6gym_O interface=9,11,39,54,64,101,130,131,145,147,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLifasgkmvvTgakseddsklasrkyariiqkigfaakftdfkiqniVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkivlTgakqreeiyqafeaiypvlsefrkm > 6gym_Q interface= fikrdrmrRnFlrmreynefplraipkedlenmrthllKfqskkkinpvtdfhLpvrlhrkrkTrqlkvldenakklrfeefypwvmedfyntwvgsyeaGnsdsyvllsveddgsftmipadkvykftARnkyatltideaekRmDk > 6gym_R interface= dldlersnRqVwlvrlpmflaekwrlgkirinkskitlLlnepheydleltkkVveneyvfteQtipkktaivgtvchecqvmpyhkiveqrrnivklnnKerittldetvgvtmshtgmsmrsdnsnfLKvmpkkeildylfkLfDeydywslKglkertrqpeahlkecldkvatlvkkgpyafkytl > 6gym_W interface= piddivknLlKfvvrgfyggsfvlvldailfhsvlaedDlkqllsinktelgpLiarlrsdrlIsihkqreyppnsksvervyyyvkyphaidaikwkvhQvvqrlkddldknsepngymcpicltkytQLeavqllnfdrtefLcSlcdeplvEddsgkknkekqdklnrlmdqiqpiidslkkiddsrixxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxedefedvt