6ht5_DE : 3D-footprint complex

structure name	OCT4/SOX2:UTF1 STRUCTURE
reference	Vahokoski et al. 'To ? ? ?
source	MUS MUSCULUS
experiment	X-ray (resolution=3.45, R-factor=?)
structural superfamily	HMG-box;lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	1o4x_B 8bx1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ht5_D interface=5,8,10,11,18,30,34,72,76, drvkRpmNaFMvwsrgqRrkmaqenpkmhNseiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprRk > 6ht5_E interface=46,47,50,51, gadmkalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfsQTtiSRfealqlslknmsklrpllekwveeadnnenlqeisksetlvqarkrkrts
interface signature	RNFMRNSYR/QTSR

Estimated binding specificities ?

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# IC=11.161 IC/col=1.015 n_of_columns=11

specificity:

A |  12  80   0   0   5   0   5  96   0  10   0
C |  74   6   1   0   5   0   6   0   0   7  96
G |   5   5   5   0  80   0   5   0   0  74   0
T |   5   5  90  96   6  96  80   0  96   5   0

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updated Tue Sep 10 14:02:55 2024