6j4f_F : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ATWRKY2 DOMAIN (Probable WRKY transcription factor 2)
reference	Xu et al. 'To ? ? ?
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.40, R-factor=0.192)
structural superfamily	WRKY DNA-binding domain;
sequence family	WRKY DNA binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6j4f_F interface=10,11,12,14,15,26, apaedgynwRKYgQKlvkgseyprsYykctnpncqvkkkversreghiteiiykgahnhlkpl
interface signature	RKYQKY

Estimated binding specificities ?

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# IC=5.339 IC/col=0.667 n_of_columns=8

specificity:

A |  11   9   9  24  24  96   0   0
C |  67   9   9  24  24   0  96  96
G |   9  11   9  24  24   0   0   0
T |   9  67  69  24  24   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RTKTYTQTKGYT   L   +-----------------------------2lex_A    
                   --3 
  --KTYTQTKGYT       !         +-------------------7z0u_A    
                     +---------2 
  RTKT--QTKGYT                 !             +-----6j4g_B    
                               +-------------1 
  RTKT--QTKGYT                               +-----6j4e_B

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updated Fri Sep 13 22:06:44 2024