6j4f_F : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ATWRKY2 DOMAIN (Probable WRKY transcription factor 2)
reference	Xu et al. 'To ? ? ?
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.40, R-factor=0.192)
structural superfamily	WRKY DNA-binding domain;
sequence family	WRKY DNA binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6j4f_F interface=10,11,12,14,15,26, apaedgynwRKYgQKlvkgseyprsYykctnpncqvkkkversreghiteiiykgahnhlkpl
interface signature	RKYQKY

Estimated binding specificities ?

contact

# IC=5.300 IC/col=0.663 n_of_columns=8

specificity:

A |   0   0   0  24  24  67  67   9
C |   0   0   0  24  24  11   9  11
G |  96  96   0  24  24   9   9  67
T |   0   0  96  24  24   9  11   9

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RTKTYTQTKGYT   L   +-----------------------------2lex_A    
                   --3 
  --KTYTQTKGYT       !         +-------------------7z0u_A    
                     +---------2 
  RTKT--QTKGYT                 !             +-----6j4g_B    
                               +-------------1 
  RTKT--QTKGYT                               +-----6j4e_B

home
updated Sun Aug 3 11:46:36 2025