6raz_234567 : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Thu Jun 25 22:40:49 2026

structure name	D. MELANOGASTER CMG-DNA, STATE 2B
source	DROSOPHILA MELANOGASTER
experiment	NMR
structural superfamily	Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	6raz_3 6raz_4 6raz_6 6raz_7
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6raz_2 interface= lgprteianrfqsflrtfvdergaytyrdrirrmceqnmssfvvsytdlankehvlayflpeapfqmleifdkvakdmvlsifptyervtteihvrislplieelrtfrklhlnqlvrtlgvvtattgvlpqlsvikydcvknmeqtlyrnyqkitlqespgripagriprskdvilladlcdqckpgdelevtgiytnnydgslntdqgfpvfatviianhvvvkdskqvdiatiqklskdprivervvasmapsiyghdyikralalalfggesknpgekhkvrgdinllicgdpgtaksqflkytekvapravfttgqgasavglyvrrnpvsrewtleagalvladqgvclidefdkmndqdrtsiheameqqsisiskagivtslqarctviaaanpiggrydpsmtfsenvnlsepilsrfdvlcvvkdefqlakfvvhshmkhheipqdllrqyivyakenirpkltnidedkiakmyaqlrqesfatgslpitvrhiesvirmseaharmhlrenvmeadvsmairmmlesfieaqkfsvmkkmrstfqky > 6raz_3 interface=359, egeqfikdiqreyvdflddeedqgiyaghvkdmiaekskrlivnvndlkrknpqralgllsnaadeqlafgralkeyastvdpgyakmhedlfvgferhvtprsltsiylgnmvcvegivtkvslirpkvvrsvhycpntrkvmerkytdltsfeavpsgaayptkdedgnlleteyglsvykdhqtltiqempekaplprsvdivcdddlvdrckpgdrvqivgsyrclpgkrgtfrtvllannisllskeldisredimlckklaknndifellskslapsighvkqailclllggvekilpngtrlrgdinvllgdpsaksqllryvlntapraipttgrgssgvgltaavttdqEtgerrleagamvladrgvvcidefdkmsdidrtaihevmeqgrvtiskagihaslnarcsvlaaanpvygrydqyktpmeniglqdsllsrfdllfvmldvidsdvdqmisdhvvrmhryrnpkeyekydallhgksrqrhekilsvefmrkyihiakcmkpklgeqaceaianeysrlrsqeavetdvartqpitartletlirlstahararmsksvtiddahaaielv > 6raz_4 interface=386, qlvvwgtnvvvsqckskfksfimrfidpsaeqdeiseninqplylqkleeihtleepylnlncahlktfdqdlyrqlicypqevipgfdmainemfferypaallehqiqvfnadktrnmrslnpedmdqlisisgmvirssnvipemreaffscnicsfsttvevdrgrinqptlctncntnhcfrlihnrseftdkqlvklqespddmaagqtphnvllyahndlvdkvqpgdrvtvtgiyratplktgglsssvksvykthvdvvhfrkfppervellqllakkpdiydrlaraiapsiyenddikkgillqlfggtkkkhatlgrqnfrseihlllcgdpgtsksqmlqyvfnlvprsqytsgrgssavgltayvtkdpetRqlvlqtgalvladngvccidefdkmndstrsvlhevmeqqtlsiakagiicqlnartsilaaanpaesqwnkrkniidnvqlphtllsrfdliflvldpqdeifdkrlashlvslyyvtrheeedtmfdmsvlrdyiayarehlsptlsdeaqqrliqayvdmrkvgagrgqisayprqleslirlseahakvrlsnqvelldveeawrlhrealkqsat > 6raz_5 interface=175, nqqdaqinlqavkkkykefirtfneenffykyrdtlkrnylngryfleiemedlvgfdetladklnkqptehleifeeaarevadeitaprpeheehmhdiqillsnptnirqlksdcvsklvkiagiivaasgisakatrmsiqclscstvipnlyalprkcnteqagrpkcpLdpffimpdkckcvdfqtlklqelpdfvpqgeiprhlqlfcdrslcervvpgnrvliqgiysirkvgkavvgvrapymrvvgitvdsegagaisrytsdeeehfrrmaasgdiyerlsqslapsifgsrdikkaitcmlfggsrkrlpdglcrrgdinvlllgdpgtaksqllkfvekvpiavytsgkgsstdpqtrnfvmeggamvladggvvcidefdkmreddrvaiheameqqtisiakagitttlnsrcsvlaaansifgrwddtkgeenidfmptilsrfdmifivkdihdesrditlakhiinvhlssnksapsepaegeislstfkkyihycrthcgprlseapitvrqleviriseslakirlqpfatdehvnealrlfqvstldaam > 6raz_6 interface=369, vkdevgiraqklfqdfleefkedgeikytrpaaslespdrctlevsfedvekydqnlataiieeyyhiypflcqsvsnyvkdriglktqkdcyvaftevptrkvrdlttskigtlirisgqvvrthpvhpelvsgvfmcldcqteirnveqqfkftnpticrnpvcsnrkrfmldvekslfldfqkiriqetqaelprgcipraveiilrselvetvqagdrydftgtlivvpdyrmaflacsvqatdlpmsevtaedmkkqmtdaewhkiyemskdrnlyqnlisslfpsiygndevkrgillqqfggvaktttektslrgdinvcivgdpstaksqflkqvsdfspraiytsgkassaagltaavvRdeesfdfvieagalmladngiccidefdkmdqrdqvaiheameqqtisiaragvratlnartsilaaanpingrydrskslqqniqlsapimsrfdlffilvdecnevvdyaiarkivdlhsnieesveraytreevlryvtfarqfkpvisqeaghmlvenyghlrqrdtgtswritvrqlesmirlseamaklecsnrvlerhvkeafrllnksiir > 6raz_7 interface=254,255,256, rrdyaqdresiktflsefckcdddgkkefvygsqlvklahreqvlitidlddlaefneslaeavncrrytsifsdviaellpsvhakdaldvyiehrlmmefpselmkrfevgfahsirevkaqhigklvtvrgivtrctevkpmmvvatytcdrcgsetyqpvnslsftpvhdcpsddcrvnkaggrlylqtrgskfvkfqevkmqehsdqvpvghiprsmtimcrgevtrmaqpgdhivvsgvflplmrtgFAQmiqgllsetflqahriicipeeleelaqddfyerlatslapeiyghldvkkalllllvggvdkrpdgmkirgniniclmgdpgvaksqllgyisrlavrsqyttgrgssgvgltaavmkdpltgemtleggalvladqgvccidefdkmadqdrtaihevmeqqtisiakagimttlnarvsilaaanpafgrynprrtveqniqlpaallsrfdllwliqdkpdrdndlrlakhityvhshskqpptrvkaldmnlmrryinlckrknptipdeltdyivgayvelrrearnqkdmtftsarnllgilrlstalarlrlsdsvekddvaealrllemskdslnq