6raz_4 : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	D. MELANOGASTER CMG-DNA, STATE 2B
experiment	NMR
structural superfamily	Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence family	MCM2/3/5 family; ATPase family associated with various ce; Magnesium chelatase, subunit ChlI 1285;
multimeric complexes	6raz_234567
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6raz_4 interface=386, qlvvwgtnvvvsqckskfksfimrfidpsaeqdeiseninqplylqkleeihtleepylnlncahlktfdqdlyrqlicypqevipgfdmainemfferypaallehqiqvfnadktrnmrslnpedmdqlisisgmvirssnvipemreaffscnicsfsttvevdrgrinqptlctncntnhcfrlihnrseftdkqlvklqespddmaagqtphnvllyahndlvdkvqpgdrvtvtgiyratplktgglsssvksvykthvdvvhfrkfppervellqllakkpdiydrlaraiapsiyenddikkgillqlfggtkkkhatlgrqnfrseihlllcgdpgtsksqmlqyvfnlvprsqytsgrgssavgltayvtkdpetRqlvlqtgalvladngvccidefdkmndstrsvlhevmeqqtlsiakagiicqlnartsilaaanpaesqwnkrkniidnvqlphtllsrfdliflvldpqdeifdkrlashlvslyyvtrheeedtmfdmsvlrdyiayarehlsptlsdeaqqrliqayvdmrkvgagrgqisayprqleslirlseahakvrlsnqvelldveeawrlhrealkqsat

  
  --------------------------------FTQA----------                        +------------6raz_7    
                                                               +--------1 
  TTAT--------TT--WT--RTITYTETRTWT----NTMTQTLT--   L   +-------2        +------------6irq_A    
                                                       !       ! 
  ----NTMTQTTT--WT--RT--------------------------   L --3       +---------------------8uzt_A    
                                                       ! 
  --------------------------------------------RT       +-----------------------------6u0m_6

home
updated Tue Jun 30 01:00:05 2026