3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameD. MELANOGASTER CMG-DNA, STATE 2B
(DNA REPLICATION LICENSING FACTOR MCM7)
sourceDROSOPHILA MELANOGASTER
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family; ATPase family associated with various cellul;
multimeric complexes6raz_234567
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----------------------------------------FTATQA--------         +-----------6raz_7    
                                                               +-2 
  RTTTKT----------------------ITYT--RTETWT--------RTQTFT   L   ! !           +2vw9_A    
                                                             --3 +-----------1 
  ----------NTMTQTTT--WT--RT----------------------------   L   !             +8uzt_A    
                                                               ! 
  ------TTAT--------TT--WT--RTITYTET--RTWT------YTTT----   L   +-------------6irq_A

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updated Tue Jun 30 01:02:40 2026