interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE S. CEREVISIAE REPLICATIVE HELICASE CMG IN COMPLEX WITH A FORKED DNA
(DNA REPLICATION LICENSING FACTOR MCM7)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family; ATPase family associated with various ce; Magnesium chelatase, subunit ChlI 1231;
multimeric complexes6u0m_25 6u0m_3467
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------------FA--KT------                                            +---------6u0m_7    
                                                              +---------1 
  ------------------RT------                              +---2         +---------6xtx_7    
                                                          !   ! 
  ------------------RT--WT--                            +-3   +-------------------6xtx_2    
                                                        ! ! 
  ------------------RT------                          +-4 +-----------------------6u0m_5    
                                                      ! ! 
  --------------------DA----                        +-5 +------------------------6u0m_3    
                                                    ! ! 
  ----------------------LT--                      +-6 +--------------------------6xtx_4    
                                                  ! ! 
  ------------------KT------                    +-7 +--------------------------6sko_7    
                                                ! ! 
  ------------------RT--FTAT                  +-8 +---------------------------6xtx_6    
                                              ! ! 
  ----------------VT----YT--                +-9 +---------------------------6sko_6    
                                            ! ! 
  ----------------------WT--             +-10 +---------------------------6u0m_2    
                                         !  !  
  --------------------KT----          +-11  +----------------------------6raw_5    
                                      !  !  
  ----------------------WT--       +-12  +----------------------------6sko_2    
                                   !  !  
  ----------------VT--------     -13  +----------------------------6raw_3    
                                   !  
  TTATNTTTATFTNT------------   L   +-----------------------------6bhx_B    
                                 

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updated Fri Dec 23 01:20:08 2022