interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameB. SUBTILIS SSBA WITH DNA
(Single-stranded DNA-binding protein A)
referenceSatyshur et al. 'J. 431 178 2019
sourceBacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experimentX-ray (resolution=2.94, R-factor=0.219)
structural superfamilyNucleic acid-binding proteins;
sequence familySinglestrand binding protein family; OBfold nucleic acid binding domain;
multimeric complexes6bhx_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RTTTKT----------TT--ATNTTTFTAT--FTNT----------------------------------   L                           +--6bhx_B    
                                                                                                    +--------2 
  ------RTTT--KT------TT------------VT--FT----RTFT----IT--YT--RTETWT--RT--QTFT   L                  !        ! +2vw9_A    
                                                                                          +---------3        +-1 
  RT--KTNT--------------AT----------TT--WTRT------RT--IT--YTET--RTWTYTTT------   L        !         !          +6irq_A    
                                                                                     +----4         ! 
  RCVC--NC----RC----VCNCTCEC--------TCECWCRC----FCKCECVCECYC--QCRC------NC----       !    !         +-----------1eyg_D    
                                                                                   --5    ! 
  ------------STTTDT--------------------QCHC--FAKT----------------------------   L   !    +---------------------1qzh_E    
                                                                                     ! 
  ------------------------------------------TA--------------------------------       +--------------------------2q2u_C    
                                                                                   

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updated Fri Sep 13 21:19:54 2024