interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF LUXR WITH DNA (ACTIVATION)
(HTH-type transcriptional regulator LuxR)
referenceReverter et al. 'Nucleic 49 3274 2021
sourceVibrio alginolyticus
experimentX-ray (resolution=2.60, R-factor=0.222)
structural superfamilyHomeodomain-like;Tetracyclin repressor-like, C-terminal domain;
sequence familyBacterial regulatory proteins, tetR family;
multimeric complexes7amn_AB 7amt_AB
reference complex7amn_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSATF

Estimated binding specificities ?

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# IC=5.827 IC/col=0.647 n_of_columns=9 specificity:   
A |  80   0  85  24   5   5  24   6  80
C |   6   0   6  24   6   5  24  80   5
G |   5   0   5  24   5  75  24   5   5
T |   5  96   0  24  80  11  24   5   6
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updated Fri Sep 13 03:37:28 2024