7amv_BKW : 3D-footprint complex

structure name	ATOMIC STRUCTURE OF THE POXVIRUS TRANSCRIPTION PRE-INITIATION COMPLEX IN THE INITIALLY MELTED STATE
source	VACCINIA VIRUS GLV-1H68
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	7amv_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7amv_B interface=383, emdqrlgykflvpdpkagvfyrplhfqyvsysnfilhrlheiltvkrpllsfknnterimieisnvkvtppdyspiiasikgksydalatftvnifkevmtkegisitkissyegkdshlikiplligygnknpldtakylvpnviggvfinkqsvekvginlvekittwpkfrvvkpnsftfsfssvsppnvlptryrhykisldisqlealnisstktfitvnivllsqylsrvslefirrslsydmppevvylvnaiidsakritesitdfnidtyindlveaehikqksqltinefkyemlhnflphmnytpdqlkgfymisllrkflycifhtsrypdrdsmvchriltygkyfetlahdelenyignirndimnnhKnrgtyavnihvlttpglnhafssllsgkfkksdgsyrthphyswmqnisiprsvgfypsvrkyhpsqylyfcssdvpergpqvglvsqlsvlssitniltseyldlekkiceyirsyykddisyfetgfpitienalvaslnpnmicdfvtdfrrrkrmgffgnlevgitlvrdhmneirinigagrlvrpflvvdngelmmdvcpelesrlddmtfsdiqkefphviemvdieqftfsnvcesvqkfrmmskderkqydlcdfpaefrdgyvasslvginhnsgprailgcaqakqaisclssdirnkidngihlmyperpiviskaletskiaancfgqhvtialmsykginqedgiiikkqfiqrggldivtakkhqveiplenfnnaysklesnglvrlnaflesgdamarnisssfdvsekytdmyksrvervqveltdkvkvrvltmkerrpilgdkfttrtsqkgtvayvadetelpydengitpdviinstsifsrktismlieviltaaysakpynnkgenrpvcfpssnetsidtymqfakqcyehsnpklsdeelsdkifcekilydpetdkpyaskvffgpiyylrlrhltqdkatvrcrgkktklirqanegrkrgggikfgemerdcliahgaantitevlkdseedyqdvyvcencgdiaaqikgintclrcsklnlsplltkidtthvskvfltqmnargvkvkldferrppsfykpldkvdlkpsf > 7amv_K interface=287,302,303,304,306,307,316,318,327,366,368,369,372,377,472, ryivspqlvlqvgkgqeveralyltpydyidekspiyyflrshlniqqpeivkrhilltlrmtqlkgylgnlldikddiiiyshknnleysyvdntifnpfvytqkktllkndsflynvypgacdflviwvaracdtsipefgsyedvdnniikfetmlmevfpqldlditveskfnnifrtnlkltglkkiiqrvqdldinyksllsrydehfinmtgnhfilndeqlnlsiwdldgtlalssdgdtvminnvklftdlvsdidtqmerikgditykvhlatpinSrikldietsfifieTATnNIllssdkkiSiIlaknhisiKvknhipniekyftflviainamfnsvqksadftkvetvYwSRicQntknKnrkpiiinyldpgmkkisnnfyrsdekevfindngimftcmdplgkynkvgflnifhdmrkycipccflhdqshrstfsscvhqidvekkivspYilnfgkvvteskmsflpiifdaflndgmtanmeqdnkrlketsgyhivrccagddivrlrttsdiiqfvnedknilivndmvyfpmnasdigkkihiliqeivhevmivkkkessdkidffppnykllkdlfpkqtiqtpiqsdagmvlttdgfyidgklfnedlsskyvtftknviasdavakyfsplfkyviseakdrfiktwminimihmnvdpnniiptlekyypnsgraqi > 7amv_W interface=197,271,273,391,394, mntgiidlfdnhvdsiptilphqlatldylvrtiidenrsvllfhimgsgktiiallfalvasrfkkvyilvpninilkifnynmgvamnlfndefiaenifihsttsfyslnyndnvinynglsrynnsifivdeahnifgnntgelmtviknknkipflllsgspitntpntlghiidlmseetidfgeiisrgKkviqtllnergvnvlkdllkgrisyyempdkdlptiryhgrkfldtrvvychmsklqerdymitrrqlcyhemFdKnmynvsmavlgqlnlmnnldtlfqeqdkelypnlkinngvlygeelvtlnisskfkyfinriqtlngkhfiyfsnstygglvikyimlsngyseyngsqgtnphmingkpktfaivtSkmKssledlldvynspenddgsqlmflfssnimsesytlkevrhiwfmtipdtfsqynqilgrsirkfsyadisepvnvyllaavysdfndevtslndytqdelinvlpfdikkllylkfktketnriysilqemsetyslpphpsivkvllgelvrqffynnsrikyndtkllkmvtsviknkedarnyiddivnghffvsnkvfdksllykyendiitvpfrlsyepfvwgvnfrkeynvvssp
interface signature	K/STATNISIKYSRQKY/KFKSK

Estimated binding specificities ?

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# IC=15.182 IC/col=0.490 n_of_columns=31

specificity:

A |  96   0  16  24  24  24  20  24  24  24  24  24  24  24  24  96   0  96  24  24  24   0   0   0   0  96  96  24  24  24  13
C |   0   0  13  24  24  24  13  24  24  24  24  24  24  24  24   0   0   0  24  24  24   0   0   0  96   0   0  24  24  24  22
G |   0  96  13  24  24  24  15  24  24  24  24  24  24  24  24   0   0   0  24  24  24   0   0   0   0   0   0  24  24  24  13
T |   0   0  54  24  24  24  48  24  24  24  24  24  24  24  24   0  96   0  24  24  24  96  96  96   0   0   0  24  24  24  48

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updated Wed Sep 11 02:25:37 2024