7amv_BKW : 3D-footprint complex

structure name	ATOMIC STRUCTURE OF THE POXVIRUS TRANSCRIPTION PRE-INITIATION COMPLEX IN THE INITIALLY MELTED STATE
source	VACCINIA VIRUS GLV-1H68
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	7amv_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7amv_B interface=383, emdqrlgykflvpdpkagvfyrplhfqyvsysnfilhrlheiltvkrpllsfknnterimieisnvkvtppdyspiiasikgksydalatftvnifkevmtkegisitkissyegkdshlikiplligygnknpldtakylvpnviggvfinkqsvekvginlvekittwpkfrvvkpnsftfsfssvsppnvlptryrhykisldisqlealnisstktfitvnivllsqylsrvslefirrslsydmppevvylvnaiidsakritesitdfnidtyindlveaehikqksqltinefkyemlhnflphmnytpdqlkgfymisllrkflycifhtsrypdrdsmvchriltygkyfetlahdelenyignirndimnnhKnrgtyavnihvlttpglnhafssllsgkfkksdgsyrthphyswmqnisiprsvgfypsvrkyhpsqylyfcssdvpergpqvglvsqlsvlssitniltseyldlekkiceyirsyykddisyfetgfpitienalvaslnpnmicdfvtdfrrrkrmgffgnlevgitlvrdhmneirinigagrlvrpflvvdngelmmdvcpelesrlddmtfsdiqkefphviemvdieqftfsnvcesvqkfrmmskderkqydlcdfpaefrdgyvasslvginhnsgprailgcaqakqaisclssdirnkidngihlmyperpiviskaletskiaancfgqhvtialmsykginqedgiiikkqfiqrggldivtakkhqveiplenfnnaysklesnglvrlnaflesgdamarnisssfdvsekytdmyksrvervqveltdkvkvrvltmkerrpilgdkfttrtsqkgtvayvadetelpydengitpdviinstsifsrktismlieviltaaysakpynnkgenrpvcfpssnetsidtymqfakqcyehsnpklsdeelsdkifcekilydpetdkpyaskvffgpiyylrlrhltqdkatvrcrgkktklirqanegrkrgggikfgemerdcliahgaantitevlkdseedyqdvyvcencgdiaaqikgintclrcsklnlsplltkidtthvskvfltqmnargvkvkldferrppsfykpldkvdlkpsf > 7amv_K interface=287,302,303,304,306,307,316,318,327,366,368,369,372,377,472, ryivspqlvlqvgkgqeveralyltpydyidekspiyyflrshlniqqpeivkrhilltlrmtqlkgylgnlldikddiiiyshknnleysyvdntifnpfvytqkktllkndsflynvypgacdflviwvaracdtsipefgsyedvdnniikfetmlmevfpqldlditveskfnnifrtnlkltglkkiiqrvqdldinyksllsrydehfinmtgnhfilndeqlnlsiwdldgtlalssdgdtvminnvklftdlvsdidtqmerikgditykvhlatpinSrikldietsfifieTATnNIllssdkkiSiIlaknhisiKvknhipniekyftflviainamfnsvqksadftkvetvYwSRicQntknKnrkpiiinyldpgmkkisnnfyrsdekevfindngimftcmdplgkynkvgflnifhdmrkycipccflhdqshrstfsscvhqidvekkivspYilnfgkvvteskmsflpiifdaflndgmtanmeqdnkrlketsgyhivrccagddivrlrttsdiiqfvnedknilivndmvyfpmnasdigkkihiliqeivhevmivkkkessdkidffppnykllkdlfpkqtiqtpiqsdagmvlttdgfyidgklfnedlsskyvtftknviasdavakyfsplfkyviseakdrfiktwminimihmnvdpnniiptlekyypnsgraqi > 7amv_W interface=197,271,273,391,394, mntgiidlfdnhvdsiptilphqlatldylvrtiidenrsvllfhimgsgktiiallfalvasrfkkvyilvpninilkifnynmgvamnlfndefiaenifihsttsfyslnyndnvinynglsrynnsifivdeahnifgnntgelmtviknknkipflllsgspitntpntlghiidlmseetidfgeiisrgKkviqtllnergvnvlkdllkgrisyyempdkdlptiryhgrkfldtrvvychmsklqerdymitrrqlcyhemFdKnmynvsmavlgqlnlmnnldtlfqeqdkelypnlkinngvlygeelvtlnisskfkyfinriqtlngkhfiyfsnstygglvikyimlsngyseyngsqgtnphmingkpktfaivtSkmKssledlldvynspenddgsqlmflfssnimsesytlkevrhiwfmtipdtfsqynqilgrsirkfsyadisepvnvyllaavysdfndevtslndytqdelinvlpfdikkllylkfktketnriysilqemsetyslpphpsivkvllgelvrqffynnsrikyndtkllkmvtsviknkedarnyiddivnghffvsnkvfdksllykyendiitvpfrlsyepfvwgvnfrkeynvvssp
interface signature	K/STATNISIKYSRQKY/KFKSK

Estimated binding specificities ?

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# IC=9.727 IC/col=0.314 n_of_columns=31

specificity:

A |  38  31  27  24  12   1   9  70  78  52  24  24  24   4  96   0  24  24  24  24  24  24  24  24  31  24  22  24  34   0   0
C |  19  21  25  24  12   1  11   8   6  14  24  24  24   2   0   0  24  24  24  24  24  24  24  24  23  24  30  24  20  96   0
G |  19  23  22  24  12   1  67   8   6  16  24  24  24   2   0   0  24  24  24  24  24  24  24  24  21  24  22  24  22   0   0
T |  20  21  22  24  60  93   9  10   6  14  24  24  24  88   0  96  24  24  24  24  24  24  24  24  21  24  22  24  20   0  96

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updated Sun Dec 15 02:28:47 2024