7m1x_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1f66_ABCDEFGH 3wa9_ABCDEFGH 3waa_ABCDEFGH 5b33_ABCDEFGH 5z30_ABCDEFGH 6jou_ABCDEFGH 7m1x_ABCDEFGH 8jhf_ABCDEFGH 8t9f_ABCDEFGH 8thu_ABCDEFGH 9b3p_ABCDEFGH
redundant complexes	1f66_C 3waa_C 6jou_G 3wa9 5b33 5z30 7yrd 7yrg 8jhf 8t9f 8thu 9b3p
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7m1x_C interface=30, avsrsqraglqfpvgrihrhlksrttshgRvgataavysaaileyltaevlelagnaskdlkvkritprhlqlairgdeeldslikatiagggviphihksli

  
  --RG----                                  +8txv_G    
                                          +-1 
  --RA----                      +---------3 +1zla_C    
                                !         ! 
  --RG----                 +----5         +5x0y_G    
                           !    ! 
  --RA--RA           +-----7    +---------6a5l_g    
                     !     ! 
  --RG----       +--10     +--------------8jla_C    
                 !   !  
  --RT----       !   !                    +8smw_G    
                 !   +--------------------2 
  --RG----       !                        +8ox0_C    
               -11  
  --RT----       !            +-----------8u14_G    
                 !    +-------6 
  LCRT----       !    !       +-----------8hr1_E    
                 +----9 
  --RG--RG            !              +-----8kcb_A    
                      ! +------------4 
  ----RA--            +-8            +-----6g0l_D    
                        ! 
  --RT----              +------------------8grq_A

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updated Wed Dec 18 09:46:33 2024