3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Tue Sep 10 02:27:52 2024

structure name	THE CRYSTAL STRUCTURE OF THE H2AZ NUCLEOSOME WITH H3.3.
reference	Kurumizaka et al. 'Open 6 ? 2016
source	HOMO SAPIENS
experiment	X-ray (resolution=2.92, R-factor=?)
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	5gtc_H 5o9g_F 6a5l_d 6buz_H 6c0w_H 6ftx_B 6r8y_H 6see_H 6t7a_H 6x0n_f 6x59_H 6y5d_H 7d1z_H 7e8d_H 7k5x_H 7k60_H 7k63_H 7m1x_C 7nkx_f 7pet_H 7scy_H 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8h0v_h 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5b33_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger > 5b33_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5b33_C interface=30, avsrsqraglqfpvgrihrhlksrttshgRvgataavysaaileyltaevlelagnaskdlkvkritprhlqlairgdeeldslikatiagggviphihksligk > 5b33_D interface= rkesysiyvykvlkqvhpdtgisskamgiMnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 5b33_E interface=3,4,28, phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 5b33_F interface=27, rkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5b33_G interface=29,64, vsrsqraglqfpvgrihrhlksrttshgRvgataavysaaileyltaevlelagnaskdlkvkRitprhlqlairgdeeldslikatiagggviphihksligk > 5b33_H interface= rkesysiyvykvlkqvhpdtgisskamgImnsfvndiferiageasrlahynkrstitsreiqTavrlllpgelakhavsegtkavtkytsa