structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC1)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;P-loop containing nucleoside triphosphate hydrolases;
reference complex5oqj_M 5oqj_O 5oqj_Q 5oqj_R 5oqj_X 5sva_Z 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRQ/SIM//NFLFVNVFLFT/RKLVREGARD/RLVETNKLLDK/LDLARVQQLSE/AEGFPESEALG

Estimated binding specificities ?

contactlogo
# IC=6.778 IC/col=0.141 n_of_columns=48 specificity:   
A |   5  24  24  24  24  24  24  24   0  50  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  10  11  96  24  24   0
C |   6  24  24  24  24  24  24  24  96  15  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  11  15   0  24  24   0
G |   5  24  24  24  24  24  24  24   0  15  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  15  15   0  24  24   0
T |  80  24  24  24  24  24  24  24   0  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96  60  55   0  24  24  96
scan!

home
updated Thu Jul 31 15:08:36 2025