structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC1)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;P-loop containing nucleoside triphosphate hydrolases;
reference complex5oqj_M 5oqj_O 5oqj_Q 5oqj_R 5oqj_X 5sva_Z 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRQ/SIM/K/NFLFVNVFLFT/RKLVREGARD/RLVETNKLLDK/LDLARVQQLSE/AEGFPESEALG

Estimated binding specificities ?

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# IC=8.103 IC/col=0.169 n_of_columns=48 specificity:   
A |  96  24  53   0  69  59  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  15   0  24  24  24  24  24  24  24  96
C |   0  24  17   0  15  15   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  11   0  24  24  24  24  24  24  24   0
G |   0  24  15   0  11  15   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7  96  24  24  24  24  24  24  24   0
T |   0  24  11  96   1   7   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  63   0  24  24  24  24  24  24  24   0
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updated Wed Jan 7 04:03:35 2026