structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX (PIC3)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;
reference complex5oqj_M 5oqj_R 5oqj_U 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDRR/K/NVFLTNVFLVT/RVLVQNKLLSK/DVA

Estimated binding specificities ?

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# IC=9.606 IC/col=0.274 n_of_columns=35 specificity:   
A |   0   0  13  96   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  17  24  96   3  85   3
C |   0   0  15   0  85  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  24   0   3   3   3
G |   0  96   3   0   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24   0   3   5   5
T |  96   0  65   0   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54  24   0  87   3  85
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updated Sun Dec 15 09:19:44 2024