structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX WITH CLOSED PROMOTER DNA IN DISTAL POSITION
sourceHOMO SAPIENS / SUS SCROFA
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Eukaryotic RPB5 N-terminal domain;RPB5-like RNA polymerase subunit;
reference complex5iy6_M 7nvy_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSHKKH/R/S/NVFALFVTNVFPLFVT/K/

Estimated binding specificities ?

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# IC=9.826 IC/col=0.209 n_of_columns=47 specificity:   
A |   0  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  12   0   0  78   0  84
C |  84  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0  12   0   0   6   0   6
G |  12  60  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  12   0   0   6   0   0
T |   0  12  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96  60  96  96   6  96   6
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updated Sun Dec 15 10:21:47 2024