7o4j_7MOQRUWX : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

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updated Thu Jul 31 17:35:14 2025

structure name	YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX (CONSENSUS)
experiment	NMR
structural superfamily	Cyclin-like;Zinc beta-ribbon;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;beta and beta-prime subunits of DNA dependent RNA-polymerase;
reference complex	5oqj_M 5oqj_O 5oqj_R 5oqj_U 5oqj_X 7o4i_B 7o4i_Q 7o4i_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7o4j_7 interface=496,516, padfvpdsvsgmfrshdfsylrlrpdhasrplwispsdgriilesfsplaeqaqdflvtiaepisrpshiheykitayslyaavsvgletddiisvldrlskvpvaesiinfikgatisygkvklvikhnryfvettqadilqmllndsvigvhsfeianesvevvkkrcqeidypvleeydfrndhrnpdldidlkpstqirpyqekslskmfgngrarsgiivlpcgagktlvgitaactikksvivlctssvsvmqwrqqflqwctlqpencavftsdnkemfqtesglvvstysmvantrnrshdsqkvmdfltgrewgfiildevhvvpaamfrrvvstiaahaklgltatlvreddkigdlnfligpklyeanwmelsqkghianvqcaevwcpmtaefyqeylretarkrmllyimnptkfqacqfliqyherrgdkiivfsdnvyalqeyalkmgkpfiygstpqqermnilqnfqyndqintiflsKvgdtsidlpeatcliqissHygsrrqeaqrlgrilrakrrndegfnaffyslvskdtqemyystkrqaflvdqgyafkvithlhgmenipnlayasprerrellqevllknhplirkmy > 7o4j_M interface= rgpnlnivltcpeckvyppkiverfsegdvvcalcglvlsdklvdrvgeasnplldgnnlstrigkgettdmrftkelnkaqgknvmdkkdnevqaafakitmlcdaaelpkivkdcakeayklchdektlkgksmesimaasiligcrraevartfkeiqslihvktkefgktlnimknilrgksedgkidtdnmsgaqnltyiprfcshlglpmqvttsaeytakkckeikeiagkspitiavvsiylnillfqipitaakvgqtlqvtegtiksgykilyehrdklvdpqliangvvsldnlpgv > 7o4j_O interface=10,12,40,55,57,63,65,100,102,131,132,146,148,154,156, tsgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 7o4j_Q interface= naspfikrdRmRrnflrmrdpneynefplraipkedlenMrthllkfqskkkinPvTdfhlpVrLhrkdtrnlqfqltraeivqrqkeiseykklrrktRqLkvldenakklrfeefypwvmedfdgyntWVgsyeagnsdsyvlLsVeddgsFtMipadkvykftarnkyatltideaekrmdkksgevprwlmkhldnigttttrydrtrrklkavadq > 7o4j_R interface=200,236, evfdgndiennetkvyeesldldlersnrqvwlvrlpmflaekwrdrnnlhgqelgkirinkdgskitlllnendndsipheydleltkkvveneyvfteqnlkkyqrdryipyvktipkktaivgtvchecqvmpsmndpnyhkiveqrrnivklnnkerittldetvgvtmshtgmsmrsdnsnflkvgrekaksniKsirmpkkeildylfklfdeydywslkglkertrqpEahlkecldkvatlvkkgpyafkytlrpeykkl > 7o4j_U interface= naeasrvyeiivesvvnevredfenagideqtlqdlkniwqkkltetkvttfswdylispdenlmlclydkvtrtkarwkcslkdgvvtinrndytfqkaqveaewv > 7o4j_W interface=79, drpiddivknllkfvvrgfyggsfvlvldailfhsvlaeddlkqllsinktelgpliarlrsdrlisihkqreyppnsKsvervyyyvkyphaidaikwkvhqvvqrlkddldknsepngymcpicltkytqleavqllnfdrteflcslcdeplveddsgkknkekqdklnrlmdqiqpiidslkkiddsrieentfeialarlippqnqshaaytynpkkgstmfrpgdsapatlhinittasdevaqrelqerqaeekrkqnavpewhkqstigktalgreerenektlndyyaalakkqaledefedv > 7o4j_X interface= siaaaalqanqtdiskshdsskllwateyiqkkgkpvlvnelldylsmkkddkviellkkldriefdpkkgtfkylstYdvhspsellkllrsqvtfkgisckdlkdgwpqcdetinqleedskilvlrtkkdktpryvwynsggnlkcideefvkmwenvqlpqfaelprklqdlglkpasvdpatikrqkgkitnthmtgilkdyshr