7xrc_C : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DIMERIC BRN2 (POU3F2) POU DOMAIN BOUND TO PALINDROMIC MORE DNA (POU DOMAIN PROTEIN)
reference	Tan et al. 'To ? ? ?
source	MUS
experiment	X-ray (resolution=1.89, R-factor=0.201)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
sequence family	Pou domain Nterminal to homeobox domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xrc_C interface=42,43,44,47,48,54,58,117,118,121,122,125, dtptsddleqfakqfkqrriklgftqadvglalgtlygnvfSQTtiCRfealqLsfkNmcklkpllnkwleeadsstsievsvkgaleshflkcpkpsaqeitsladslqlekevvRVwfCNrrQkekrmtppg
interface signature	SQTCRLNRVCNQ

Estimated binding specificities ?

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# IC=6.701 IC/col=0.957 n_of_columns=7

specificity:

A |   8  96   0   0  19  69   0
C |  72   0   0   0  61  11   0
G |   8   0   0  96   8   8   0
T |   8   0  96   0   8   8  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  SGQATG--CARG--------   L     +-----------------------------8g87_X    
                             +-2 
  SGQATT----RG--------   L   ! !            +----------------1o4x_A    
                           --3 +------------1 
  ------------ITQCNAMC   L   !              +----------------2r5y_A    
                             ! 
  TTQA--LTSAET--------   L   +-----------------------------2o4a_A

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updated Wed Dec 18 14:11:39 2024