| structure name | CRYSTAL STRUCTURE OF THE N-TERMINAL CUT DOMAIN OF SATB1 BOUND TO MATRIX ATTACHMENT REGION DNA (DNA-binding protein SATB1) |
| reference | Yamasaki et al. 'Nucleic 35 5073 2007 |
| source | Homo sapiens |
| experiment | X-ray (resolution=1.75, R-factor=0.245) |
| structural superfamily | lambda repressor-like DNA-binding domains; |
| sequence family | CUT domain; |
| multimeric complexes | 6lff_AB |
| redundant complexes |  2o49_A
6lff_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TQLSE |
Estimated binding specificities ?
| contact |  |
A | 0 96 9 9 67 C | 0 0 11 9 11 G | 0 0 9 11 9 T | 96 0 67 67 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SATB1 | ||
| TAATA | PubMed | 2o4a_A(2.54e-08), 6lff_AB(2.42e-04), 2o49_A(2.54e-08) |
| CTAATA | PubMed | 2o4a_A(1.19e-07), 6lff_AB(6.13e-04), 2o49_A(1.19e-07) |
| AAATCAATATT | PubMed | 2o4a_A(5.58e-03), 6lff_AB(1.84e-05), 2o49_A(5.58e-03) |
Dendrogram of similar interfaces ?
matrix format----TTQA--LTSAET---------- L +---------2o4a_A +---------2 --STKCQAAT--SA------------ L +---3 +---------3dnv_B ! ! ----SCQCAGRCSCKT---------- L +-4 +-------------------6lty_B ! ! --AT--QAAT--SA------------ ! ! +----4z5h_A +-5 +------------------1 QT--STNTVTATSTQTRTET------ L ! ! +----2r1j_L --6 ! QT--TTQAQGSTECQT--------RA L ! +-------------------------1per_L ! ----NTQASAHTSTQT----TTPG-- L +--------------------------1ic8_B |
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updated Fri Sep 13 16:31:58 2024