7zwd_AMORUbc : 3D-footprint complex

Interface of input file ?

structure name	STRUCTURE OF SNAPC CONTAINING POL II PRE-INITIATION COMPLEX BOUND TO U5 SNRNA PROMOTER (CC)
experiment	NMR
structural superfamily	Cyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Homeodomain-like;
reference complex	5iy6_M 5iy6_N 5iy6_P 5iy6_T 7xur_B 7zwd_c
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zwd_A interface= sacplrtikrvqfgvlspdelkrmsvteggikypetteggrpklgglmdprqgviertgrcqtcagnmtecpghfghielakpvfhvgflvktmkvlrcvcffcskllvdsnnpkikdilakskgqpkkrlthvydlckgkniceggcgryqprirrsglelyaewkkillspervheifkrisdeecfvlgmepryarpewmivtvlpvpplsvrpavvmqgsarnqddlthkladivkinnqlrrneqngaaahviaedvkllqfhvatmvdnelpglpramqksgrplkslkqrlkgkegrvrgnlmgkrvdfsartvitpdpnlsidqvgvprsiaanmtfaeivtpfnidrlqelvrrgnsqypgakyiirdngdridlrfhpkpsdlhlqtgykverhmcdgdivifnrqptlhkmsmmghrvrilpwstfrlnlsvttpynadfdgdemnlhlpqsletraeiqelamvprmivtpqsnrpvmgivqdtltavrkftkrdvflergevmnllmflstwdgkvpqpailkprplwtgkqifsliipghincirthsthpddedsgpykhispgdtkvvvengelimgilckkslgtsagslvhisylemghditrlfysniqtvinnwllieghtigigdsiadsktyqdiqntikkakqdvieviekahnneleptpgntlrqtfenqvnrilndardktgssaqkslseynnfksmvvsgakgskinisqviavvgqqnvegkripfgfkhrtlphfikddygpesrgfvensylagltptefffhamggreglidtavktaetgyiqrrliksmesvmvkydatvrnsinqvvqlrygedglagesvefqnlatlkpsnkafekkfrfdytneralrrtlqedlvkdvlsnahiqnelerefermredrevlrvifptgdskvvlpcnllrmiwnaqkifhinprlpsdlhpikvvegvkelskklvivngddplsrqaqenatllfnihlrstlcsrrmaeefrlsgeafdwllgeieskfnqaiahpgemvgalaaqslgepatqmtlnknvtlgvprlkeliniskkpktpsltvfllgqsardaerakdilcrlehttlrkvtantaiyydpnpqstvvaedqewvnvyyempdfdvarispwllrveldrkhmtdrkltmeqiaekinagfgddlncifnddnaeklvlririmnsdenkmdddvflrciesnmltdmtlqgieqiskvymhlpqtdnkkkiiitedgefkalqewiletdgvslmrvlsekdvdpvrttsndiveiftvlgieavrkalerelyhvisfdgsyvnyrhlallcdtmtcrghlmaitrhgvnrqdtgplmkcsfeetvdvlmeaaahgesdpmkgvsenimlgqlapagtgcfdllldaekckygmeip > 7zwd_M interface=211,212,214,215, tcpnhpdailvedyragdmicpecglvvgdrvidvgsewrtmmnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadVTiRQsyrliyprapdlfptdfkfdtpvdklp > 7zwd_O interface=9,11,39,40,54,56,62,64,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFAavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrk > 7zwd_R interface=158,184,195, aergeldltgakqntgvwlvkvpkylsqqwakasgrgevgklriaktqgrtevsftlnedlanehpfvlqsvggqtltvftesssdklslegivvqraecrpaasenymrlkrlqieesskpvrlsqqldkvvttnykpvanhqynieyerkkkedgKraradkqhvldmlfsafekhqyynlKdlvditkqpvVylkeilkeigvqnvkgihkntwelkpe > 7zwd_U interface= tvpklyrsviedvindvrdiflddgvdeqvlmelktlwenklmenvvvcqydkihrsknkwkfhlkdgimnlngrdyifskaigdaew > 7zwd_b interface=102,105,106,148,151,152,304, nfpeyelpelntrafhvgafgelwrgrlrgagdlslreppaadsdredaavardldcsleaaaelravcgldevipentdlvtlgvrkrflehreetitidRacRQetfvyemeshaigkkpensadmieegelilsvnilypvifhKhkEHkpyqtmlvlgsqkltqlrdsircvsdlqiggefsntpdqapehiskdlyksaffyfegtfyndkrypecrdlsrtiiewseshdrgygkfqtarmedftfndlciklgfpylychqgdcehvivitdirlvhhddcldrtlypllikkhwlWtrkcfvckmytarwvtnndsfapedpcffcdvcfrmlhydsegnklgeflaypyvdpgtfn > 7zwd_c interface=49,290,293,294, edpetclqlnmvyqeviqeklaeanlllaqnreqqeelmrdlagsymgHfmkpyfkdkvtgvgppanedtrekaaqgikafeellvtkwknwekallrksvvsdrlqrllqpkllkleylhqkqskvsselerqalekqgreaekeiqdinqlpeeallgnrldshdwekisninfegsrsaeeirkfwqnsehpsinkqewsreeeerlqaiaaahghlewqkiaeelgtsrsafqclqkfqqhnkalkrkewteeedrmltqlvqemrvgshipyrrivyymegrdsMqlIYrwtksldpg
interface signature	/VTRQ/NVFALFVTNVFPLFVT/KKV//RRQKEHW/HMIY

Estimated binding specificities ?

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# IC=23.300 IC/col=0.685 n_of_columns=34

specificity:

A |   0   0   0  96  94   0   0   0  24  24  24   0  24  24  24  24  24  24  10  71  23   7  78  24   1  24   0  90   1  24  24  96   1   1
C |   0   0   0   0   1  96   0  96  24  24  24   0  24  24  24  24  24  24   5  23  72   7   8  24   1  24  96   4   5  24  24   0   1   4
G |   0  96   0   0   0   0   0   0  24  24  24   0  24  24  24  24  24  24   5   1   1   8   5  24   4  24   0   1   0  24  24   0   4  90
T |  96   0  96   0   1   0  96   0  24  24  24  96  24  24  24  24  24  24  76   1   0  74   5  24  90  24   0   1  90  24  24   0  90   1

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updated Fri Aug 1 03:40:50 2025