7zx7_AMORUbc : 3D-footprint complex

Interface of input file ?

structure name	STRUCTURE OF SNAPC CONTAINING POL II PRE-INITIATION COMPLEX BOUND TO U1 SNRNA PROMOTER (CC)
experiment	NMR
structural superfamily	Cyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;Homeodomain-like;
reference complex	5iy6_M 5iy6_N 5iy6_P 5iy6_T 7xur_B 7zwd_c
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zx7_A interface= sacplrtikrvqfgvlspdelkrmsvteggikypetteggrpklgglmdprqgviertgrcqtcagnmtecpghfghielakpvfhvgflvktmkvlrcvcffcskllvdsnnpkikdilakskgqpkkrlthvydlckgkniceggcgryqprirrsglelyaewkkillspervheifkrisdeecfvlgmepryarpewmivtvlpvpplsvrpavvmqgsarnqddlthkladivkinnqlrrneqngaaahviaedvkllqfhvatmvdnelpglpramqksgrplkslkqrlkgkegrvrgnlmgkrvdfsartvitpdpnlsidqvgvprsiaanmtfaeivtpfnidrlqelvrrgnsqypgakyiirdngdridlrfhpkpsdlhlqtgykverhmcdgdivifnrqptlhkmsmmghrvrilpwstfrlnlsvttpynadfdgdemnlhlpqsletraeiqelamvprmivtpqsnrpvmgivqdtltavrkftkrdvflergevmnllmflstwdgkvpqpailkprplwtgkqifsliipghincirthsthpddedsgpykhispgdtkvvvengelimgilckkslgtsagslvhisylemghditrlfysniqtvinnwllieghtigigdsiadsktyqdiqntikkakqdvieviekahnneleptpgntlrqtfenqvnrilndardktgssaqkslseynnfksmvvsgakgskinisqviavvgqqnvegkripfgfkhrtlphfikddygpesrgfvensylagltptefffhamggreglidtavktaetgyiqrrliksmesvmvkydatvrnsinqvvqlrygedglagesvefqnlatlkpsnkafekkfrfdytneralrrtlqedlvkdvlsnahiqnelerefermredrevlrvifptgdskvvlpcnllrmiwnaqkifhinprlpsdlhpikvvegvkelskklvivngddplsrqaqenatllfnihlrstlcsrrmaeefrlsgeafdwllgeieskfnqaiahpgemvgalaaqslgepatqmtlnknvtlgvprlkeliniskkpktpsltvfllgqsardaerakdilcrlehttlrkvtantaiyydpnpqstvvaedqewvnvyyempdfdvarispwllrveldrkhmtdrkltmeqiaekinagfgddlncifnddnaeklvlririmnsdenkmdddvflrciesnmltdmtlqgieqiskvymhlpqtdnkkkiiitedgefkalqewiletdgvslmrvlsekdvdpvrttsndiveiftvlgieavrkalerelyhvisfdgsyvnyrhlallcdtmtcrghlmaitrhgvnrqdtgplmkcsfeetvdvlmeaaahgesdpmkgvsenimlgqlapagtgcfdllldaekckygmeip > 7zx7_M interface=212,214, tcpnhpdailvedyragdmicpecglvvgdrvidvgsewrtmmnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadvTiRqsyrliyprapdlfptdfkfdtpvdklp > 7zx7_O interface=9,11,39,40,54,56,62,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFAavimrireprttaLiFssgkmVctgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrk > 7zx7_R interface=158, aergeldltgakqntgvwlvkvpkylsqqwakasgrgevgklriaktqgrtevsftlnedlanehpfvlqsvggqtltvftesssdklslegivvqraecrpaasenymrlkrlqieesskpvrlsqqldkvvttnykpvanhqynieyerkkkedgKraradkqhvldmlfsafekhqyynlkdlvditkqpvvylkeilkeigvqnvkgihkntwelkpe > 7zx7_U interface= tvpklyrsviedvindvrdiflddgvdeqvlmelktlwenklmenvvvcqydkihrsknkwkfhlkdgimnlngrdyifskaigdaew > 7zx7_b interface=102,105,106,148,151,152,304, nfpeyelpelntrafhvgafgelwrgrlrgagdlslreppaadsdredaavardldcsleaaaelravcgldevipentdlvtlgvrkrflehreetitidRacRQetfvyemeshaigkkpensadmieegelilsvnilypvifhKhkEHkpyqtmlvlgsqkltqlrdsircvsdlqiggefsntpdqapehiskdlyksaffyfegtfyndkrypecrdlsrtiiewseshdrgygkfqtarmedftfndlciklgfpylychqgdcehvivitdirlvhhddcldrtlypllikkhwlWtrkcfvckmytarwvtnndsfapedpcffcdvcfrmlhydsegnklgeflaypyvdpgtfn > 7zx7_c interface=290,293,294, edpetclqlnmvyqeviqeklaeanlllaqnreqqeelmrdlagsymghfmkpyfkdkvtgvgppanedtrekaaqgikafeellvtkwknwekallrksvvsdrlqrllqpkllkleylhqkqskvsselerqalekqgreaekeiqdinqlpeeallgnrldshdwekisninfegsrsaeeirkfwqnsehpsinkqewsreeeerlqaiaaahghlewqkiaeelgtsrsafqclqkfqqhnkalkrkewteeedrmltqlvqemrvgshipyrrivyymegrdsMqlIYrwtksldpg
interface signature	/TR/NVFALFVNVFPLFVT/K//RRQKEHW/MIY

Estimated binding specificities ?

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# IC=26.067 IC/col=0.767 n_of_columns=34

specificity:

A |   0  96  24  96   0   0   0   0   6  24  24  24  24  24  24  24  24  24  24   0   0   0   6   6   0  96   0  78   0  78  24  96   0   0
C |  96   0  24   0   0  96  96   0  78  24  24  24  24  24  24  24  24  24  24  96   0  96   6   6   0   0  96   6  96   6  24   0  96   0
G |   0   0  24   0  96   0   0   0   6  24  24  24  24  24  24  24  24  24  24   0   0   0   6   6   0   0   0   6   0   6  24   0   0  96
T |   0   0  24   0   0   0   0  96   6  24  24  24  24  24  24  24  24  24  24   0  96   0  78  78  96   0   0   6   0   6  24   0   0   0

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updated Wed Sep 11 20:02:18 2024