8bx2_AE : 3D-footprint complex

structure name	OCT4/SOX2 PROTEIN:DNA COMPLEX
reference	Chojnowski et al. 'To ? ? ?
experiment	X-ray (resolution=3.14, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	8bx1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8bx2_A interface=45,46,49,50, mdmkalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfsQTtiSRfealqlslknmsklrpllekwveeadnnenlqeisksetlvqarkrkrts > 8bx2_E interface=4,7,9,10,17,29,33,71,75, rvkRpmNaFMvwsrgqRrkmaqenpkmhNseiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprRk
interface signature	QTSR/RNFMRNSYR

Estimated binding specificities ?

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# IC=13.766 IC/col=0.918 n_of_columns=15

specificity:

A |  90  24  24  67   0   5  96   0  79  96   5  96  96   0   0
C |   0  24  24  13   0  79   0   0   7   0  84   0   0  12   5
G |   0  24  24   5  96   7   0   0   5   0   5   0   0   0  86
T |   6  24  24  11   0   5   0  96   5   0   2   0   0  84   5

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updated Sun Dec 15 22:51:20 2024