8bx2_AE : 3D-footprint complex

structure name	OCT4/SOX2 PROTEIN:DNA COMPLEX
reference	Chojnowski et al. 'To ? ? ?
experiment	X-ray (resolution=3.14, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8bx2_A interface=45,46,49,50, mdmkalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfsQTtiSRfealqlslknmsklrpllekwveeadnnenlqeisksetlvqarkrkrts > 8bx2_E interface=4,7,9,10,17,29,33,71,75, rvkRpmNaFMvwsrgqRrkmaqenpkmhNseiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprRk
interface signature	QTSR/RNFMRNSYR

Estimated binding specificities ?

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# IC=14.143 IC/col=0.943 n_of_columns=15

specificity:

A |   6  90   0   0   0   0   6  96   0   6   0  12  24  24   6
C |  76   0   0   0   0   0   7   0   0   6  96   8  24  24   0
G |   6   6   0   0  96   0   0   0   0  76   0   6  24  24   1
T |   8   0  96  96   0  96  83   0  96   8   0  70  24  24  89

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updated Wed Sep 11 21:29:14 2024