8e5y_F : 3D-footprint complex

structure name	HUMAN PU.1 ETS-DOMAIN BOUND TO D(AATAAGCGGAAGTGGG) ACETATE FREE AT PH 5.4 (Transcription factor PU.1)
reference	Terrell et al. 'Cell 42 112671 2023
source	Homo sapiens
experiment	X-ray (resolution=1.32, R-factor=0.149)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
reference complex	8ee9_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8e5y_F interface=58,59,62,63,65,66, kirlyqflldllrsgdmkdsiwwvdkdkgtfqfsskhkealahrwgiqkgnrkkmtyQKmaRAlRNygktgevkkvkkkltyqfsgevlgr
interface signature	QKRARN

Estimated binding specificities ?

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# IC=3.387 IC/col=0.242 n_of_columns=14

specificity:

A |  24  24  24  24  22  21   6   4   0   7  24  24  24  24
C |  24  24  24  24  27  21   6  81  96   7  24  24  24  24
G |  24  24  24  24  25  23   6   7   0  74  24  24  24  24
T |  24  24  24  24  22  31  78   4   0   8  24  24  24  24

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updated Tue Dec 19 02:54:47 2023